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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02050 ATGGTAGCTGTTAAGGGGTTAAGTACAACGAAATCTATTCCAGTCATAGCTGAAACCCATCAAATTGCTAATTTGCAAAAGGAGGCCCTCAACAAGTTGGACAAGATTTATGGGAAAAGTATCAACTCTGCTCAAACTAAAGTAGGAAGAAAAGCATTGGCGGATATCGGTAATTCCCGGGCTATTTTACAGAAGAATGAAGCTGTTAATGGCCGTCAAAAACTGAGTAGAGCTGTCACCAAGGATTCGAAGGTCTTTAATGGTAATCCAAGGACACGGCTACAGGATAAAGAAAATGTTGGTGATGTAACAAGGAAATCATCGAAGATTTACTGCCCACCACAAAGTAGGAAATCGTTTCCAGTTCTAAAGCGTGTTGACAAGGTGGATAATACTGATCTCAAGAAAATAAATTTGGAAAATGAAGTGAAGAACAAGGAGAAACATGGCTTCTCTGTTAAACCTAAAGTCAACACAACTGTTGTAGCACATGTTGGAAGGAGATCGTTACCAGTTCTAAAGCATGCTGACAAGGCAAATTTGAATAATAAAGTGAAGAACAAGGACAAATATGGCTTCTCTGTTAAACCTAAAGTTGGCACTAATGTTGTACCTCAAGTAAGCAATGCCCGTGACTACCGTTTGAAGAATAGAGTTAGTGATGGATTCATAAAAATGGCATCACAAGGTCTGGCAATGGCGGGGGATGCAAAGAAATTGTCTAGGATATCAATGAAGCCAACCGTGAAAATAACAGCCGGTATTCCTCGTGCTCAAAGGGCATCAATCAGCACATCTGTTTCTACGAAATCAACATCTGGAACTCTTGTTTTATCCAAGCCAAAGGACGAAGCATCACGATGTTCATATTCTAAATCCACTGAATCTATTTCATGCGAGAAAAACACAGATGCTAGTACATCAGGCATCACTGCCAAAGGGAAACCTGGTCGCCGAAAATCATACACATCGTTGCTAATCGAAAGCACAAAGCTTCTAAAGGATCATGGCAATGCCACCAAGGAGGAGATCCTGCCCAAGATTTATGATGATAGCAATCAACTTGAAGTTGCTGAATATGTTGATGAGATCTATCAGCATTATTGGGTTACAGAAGCACACCATCAGTCACTGAAAAACTATATGGAAATCCAGACAGATATCACACCTCAAACGAGGGGTATACTGATCAATTGGCTAATAGAAGTACATTTAAAATTTGATTTGATGCAAGAGACTTTGTATCTGATGGTCACACTCTTGGATTATTACTTGTCTGCTGTCAATATCAAGAAAAATGAACTGCAACTAGTAGGACTCACATCACTATTGCTAGCATCCAAGTACGAGGACTACTGGCATCCAAAGGTTATGGAATTGATTGGTATCTCAGCAGAGACATACACAAGAGATCAAATGCTTGGCATGGAGACAACGATTTTAAGAAAGCTGAACTTTCGTCTTAATTTGCCCACGCCTTACGTTTTCATGCTTAGATTTCTCAAAGCTGCTCAGGGAGGCAAAAAGTTTGAAAAGCTAGCATTCTTCCTAATTGAGTTGTGCCTGGTGGAATATGATGCTTTACATTTCAAGCCATCCTTATTATGTGCATCAGCTATTTATCTTGCTAGATGTACTCTGCATTTGACCCCCGCATGGACCCCACTTCTACGCAAGCATTCTCACTATGAAGAATTTCAGATCAGGGATTGTGCCGGGGTGATATTGGGATTTCACCAGGCTGCAAGAAGAGCATTGTTGAGAGTTACATATGACAAATTCATGAGTGCTGATAACGGCAAAGTTGCATCGATTAAACCTCTGGACAGGCTTCCTCCTTCGTAG 1845 40.54 MVAVKGLSTTKSIPVIAETHQIANLQKEALNKLDKIYGKSINSAQTKVGRKALADIGNSRAILQKNEAVNGRQKLSRAVTKDSKVFNGNPRTRLQDKENVGDVTRKSSKIYCPPQSRKSFPVLKRVDKVDNTDLKKINLENEVKNKEKHGFSVKPKVNTTVVAHVGRRSLPVLKHADKANLNNKVKNKDKYGFSVKPKVGTNVVPQVSNARDYRLKNRVSDGFIKMASQGLAMAGDAKKLSRISMKPTVKITAGIPRAQRASISTSVSTKSTSGTLVLSKPKDEASRCSYSKSTESISCEKNTDASTSGITAKGKPGRRKSYTSLLIESTKLLKDHGNATKEEILPKIYDDSNQLEVAEYVDEIYQHYWVTEAHHQSLKNYMEIQTDITPQTRGILINWLIEVHLKFDLMQETLYLMVTLLDYYLSAVNIKKNELQLVGLTSLLLASKYEDYWHPKVMELIGISAETYTRDQMLGMETTILRKLNFRLNLPTPYVFMLRFLKAAQGGKKFEKLAFFLIELCLVEYDALHFKPSLLCASAIYLARCTLHLTPAWTPLLRKHSHYEEFQIRDCAGVILGFHQAARRALLRVTYDKFMSADNGKVASIKPLDRLPPS 614
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02050 614 PIRSF Cyclin-A-B-D-E 8 192 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cind3g02050 614 PIRSF Cyclin-A-B-D-E 197 613 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cind3g02050 614 Pfam Cyclin, N-terminal domain 363 489 IPR006671 -
Cind3g02050 614 Gene3D - 377 482 - -
Cind3g02050 614 SMART Cyclin-C-2 491 608 IPR004367 -
Cind3g02050 614 Gene3D - 483 612 - -
Cind3g02050 614 FunFam Cyclin N-terminal domain containing 2 378 486 - -
Cind3g02050 614 SUPERFAMILY Cyclin-like 491 610 IPR036915 -
Cind3g02050 614 Pfam Cyclin, C-terminal domain 491 607 IPR004367 -
Cind3g02050 614 SUPERFAMILY Cyclin-like 353 489 IPR036915 -
Cind3g02050 614 Coils Coil 129 149 - -
Cind3g02050 614 PANTHER CYCLINS 344 579 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cind3g02050 614 CDD CYCLIN-CCNB1-like-rpt1 357 486 - -
Cind3g02050 614 SMART cyclin-7 398 482 IPR013763 -
Cind3g02050 614 SMART cyclin-7 495 577 IPR013763 -
Cind3g02050 614 FunFam putative cyclin-B3-1 isoform X3 487 612 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02050 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:311298444 Cind7g02123 Cind-Chr7:233838802 dispersed
Cind Cind-Chr3:311298444 Cind7g02858 Cind-Chr7:125654974 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00823 . 1 294 Core Cell Cycle gene family AT3G48750 37.248 5.79e-66 212.0
Cind1g00967 ACH 7 326 Core Cell Cycle gene family AT5G43080 48.758 1.66e-97 289.0
Cind1g00983 . 1 353 Core Cell Cycle gene family AT5G43080 53.444 3.01e-129 371.0
Cind1g00985 . 1 353 Core Cell Cycle gene family AT5G43080 56.044 3.61e-141 402.0
Cind1g00986 . 1 353 Core Cell Cycle gene family AT5G43080 56.044 2.52e-140 400.0
Cind1g00988 . 152 312 Core Cell Cycle gene family AT5G43080 62.733 1.96e-75 231.0
Cind1g01725 . 6 434 Core Cell Cycle gene family AT5G25380 49.153 1.20e-145 422.0
Cind1g03742 . 74 237 Core Cell Cycle gene family AT5G02110 35.119 1.65e-26 105.0
Cind1g03744 . 74 237 Core Cell Cycle gene family AT5G02110 35.714 8.75e-29 112.0
Cind1g03747 . 74 237 Core Cell Cycle gene family AT5G02110 35.714 2.16e-28 111.0
Cind1g04212 . 238 309 Core Cell Cycle gene family AT3G54180 77.778 2.23e-39 130.0
Cind1g04412 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 1.01e-54 182.0
Cind1g04425 . 18 390 Core Cell Cycle gene family AT5G64960 48.285 7.34e-112 354.0
Cind1g05331 . 18 364 Core Cell Cycle gene family AT5G10270 48.718 6.62e-105 326.0
Cind1g04898 . 12 339 Core Cell Cycle gene family AT1G70210 58.284 5.24e-127 365.0
Cind1g07043 . 18 367 Core Cell Cycle gene family AT5G10270 46.761 1.47e-107 331.0
Cind1g07139 . 3 301 Core Cell Cycle gene family AT3G54180 28.696 2.64e-29 114.0
Cind1g07373 . 332 409 Core Cell Cycle gene family AT3G11520 43.038 1.40e-11 57.8
Cind1g07374 . 339 428 Core Cell Cycle gene family AT4G37490 40.659 1.90e-13 63.2
Cind1g07379 . 1 294 Core Cell Cycle gene family AT3G48750 52.174 9.35e-91 273.0
Cind1g07383 . 338 409 Core Cell Cycle gene family AT3G11520 41.096 2.56e-09 51.2
Cind1g07388 . 330 416 Core Cell Cycle gene family AT5G06150 43.333 6.95e-20 80.5
Cind1g07389 . 248 290 Core Cell Cycle gene family AT3G48750 60.465 5.89e-11 55.8
Cind1g07390 . 339 428 Core Cell Cycle gene family AT4G37490 37.778 1.46e-12 60.5
Cind1g07391 . 297 400 Core Cell Cycle gene family AT5G06150 39.252 1.99e-20 82.8
Cind2g00002 . 8 302 Core Cell Cycle gene family AT3G54180 26.765 6.87e-13 67.8
Cind2g00063 . 752 880 Core Cell Cycle gene family AT3G12280 61.94 5.90e-49 172.0
Cind2g00164 . 11 315 Core Cell Cycle gene family AT1G20930 85.246 0.0 551.0
Cind2g00203 . 197 429 Core Cell Cycle gene family AT1G76310 24.125 6.98e-06 47.4
Cind2g00699 . 8 302 Core Cell Cycle gene family AT3G54180 27.987 5.17e-13 67.8
Cind2g01028 . 17 371 Core Cell Cycle gene family AT5G64960 44.231 1.96e-93 300.0
Cind2g01547 ACH 9 302 Core Cell Cycle gene family AT5G65420 44.688 2.68e-77 237.0
Cind2g02039 . 18 357 Core Cell Cycle gene family AT5G10270 51.32 3.31e-114 347.0
Cind2g02302 . 1 220 Core Cell Cycle gene family AT5G48820 36.564 7.31e-34 117.0
Cind2g02931 . 20 290 Core Cell Cycle gene family AT1G66750 31.013 1.78e-29 119.0
Cind2g03329 . 209 270 Core Cell Cycle gene family AT2G26760 70.968 3.40e-24 95.9
Cind2g04146 . 410 462 Core Cell Cycle gene family AT4G28980 60.377 1.29e-13 63.2
Cind2g04147 . 410 462 Core Cell Cycle gene family AT4G28980 60.377 1.29e-13 63.2
Cind2g04161 . 410 479 Core Cell Cycle gene family AT4G28980 47.368 1.89e-12 59.7
Cind2g04458 . 21 390 Core Cell Cycle gene family AT5G10270 43.832 1.03e-100 307.0
Cind2g05769 . 18 364 Core Cell Cycle gene family AT5G10270 46.705 2.10e-106 329.0
Cind2g05914 . 5 459 Core Cell Cycle gene family AT1G44110 57.143 0.0 519.0
Cind2g05987 . 2 309 Core Cell Cycle gene family AT3G54180 62.987 1.74e-131 372.0
Cind2g06006 . 2 309 Core Cell Cycle gene family AT3G54180 74.026 6.20e-164 455.0
Cind2g06040 . 13 315 Core Cell Cycle gene family AT1G20930 80.528 0.0 524.0
Cind2g06041 . 9 245 Core Cell Cycle gene family AT1G76540 78.903 1.25e-135 381.0
Cind2g06086 . 2 309 Core Cell Cycle gene family AT3G54180 81.818 0.0 528.0
Cind3g00742 . 24 251 Core Cell Cycle gene family AT2G26760 44.255 2.61e-52 174.0
Cind3g00743 . 24 377 Core Cell Cycle gene family AT2G26760 51.667 1.35e-122 357.0
Cind3g00807 . 1 317 Core Cell Cycle gene family AT5G27620 59.306 2.29e-136 388.0
Cind3g00856 . 1 197 Core Cell Cycle gene family AT5G48820 39.901 1.74e-25 95.9
Cind3g00903 ACH 99 239 Core Cell Cycle gene family AT5G27620 28.0 2.53e-12 63.9
Cind3g01043 . 134 394 Core Cell Cycle gene family AT1G44110 54.135 8.14e-93 280.0
Cind3g01709 . 211 262 Core Cell Cycle gene family AT5G65420 45.283 1.91e-06 45.4
Cind3g02050 . 61 647 Core Cell Cycle gene family AT1G16330 43.942 2.04e-153 454.0
Cind3g02818 . 21 166 Core Cell Cycle gene family AT5G10270 47.26 3.76e-32 128.0
Cind3g02819 . 215 306 Core Cell Cycle gene family AT1G20930 42.718 2.07e-21 84.7
Cind3g02874 . 2 83 Core Cell Cycle gene family AT2G27970 81.707 8.69e-45 137.0
Cind3g03213 ACH 47 348 Core Cell Cycle gene family AT5G67260 49.691 1.13e-94 285.0
Cind3g04324 . 150 195 Core Cell Cycle gene family AT1G49620 63.043 3.81e-19 77.8
Cind3g04899 . 19 497 Core Cell Cycle gene family AT1G02970 43.585 1.06e-119 356.0
Cind3g05660 . 18 376 Core Cell Cycle gene family AT5G10270 51.667 3.23e-120 366.0
Cind4g00064 . 12 304 Core Cell Cycle gene family AT1G76540 31.773 1.14e-40 144.0
Cind4g00404 . 137 222 Core Cell Cycle gene family AT5G48820 45.349 2.50e-18 76.3
Cind4g00202 . 1 505 Core Cell Cycle gene family AT5G10270 73.981 0.0 736.0
Cind4g00678 ACH 140 365 Core Cell Cycle gene family AT5G67260 47.059 4.91e-65 204.0
Cind4g00815 ACH 1 353 Core Cell Cycle gene family AT5G43080 56.749 6.00e-147 417.0
Cind4g00889 . 19 304 Core Cell Cycle gene family AT1G76540 25.223 2.48e-26 106.0
Cind4g01352 . 18 401 Core Cell Cycle gene family AT5G10270 41.878 1.16e-101 315.0
Cind4g02227 . 76 337 Core Cell Cycle gene family AT2G22490 47.191 4.67e-72 226.0
Cind4g03175 . 18 357 Core Cell Cycle gene family AT5G10270 52.786 5.79e-116 352.0
Cind4g03510 . 5 310 Core Cell Cycle gene family AT1G20930 45.741 3.93e-88 272.0
Cind4g04828 . 18 286 Core Cell Cycle gene family AT4G34160 47.018 1.11e-79 246.0
Cind4g04470 . 19 459 Core Cell Cycle gene family AT1G80370 49.889 1.14e-133 391.0
Cind4g05677 . 20 366 Core Cell Cycle gene family AT5G10270 44.318 2.28e-91 288.0
Cind5g00566 ACH 1 82 Core Cell Cycle gene family AT2G27970 82.927 1.56e-47 144.0
Cind5g00814 . 12 242 Core Cell Cycle gene family AT3G48750 30.204 3.62e-15 74.3
Cind5g00823 . 2 357 Core Cell Cycle gene family AT4G28980 25.543 2.61e-18 87.4
Cind5g01258 . 164 290 Core Cell Cycle gene family AT1G02970 52.756 5.74e-41 146.0
Cind5g01968 . 1 290 Core Cell Cycle gene family AT3G48750 36.054 1.29e-64 208.0
Cind5g02623 . 3 287 Core Cell Cycle gene family AT3G48750 26.176 1.70e-25 103.0
Cind5g04210 . 3 73 Core Cell Cycle gene family AT3G48750 50.704 1.35e-15 72.0
Cind5g04506 . 170 296 Core Cell Cycle gene family AT3G11520 48.485 3.02e-30 120.0
Cind5g04535 . 165 294 Core Cell Cycle gene family AT3G48750 68.462 3.26e-62 190.0
Cind5g04630 . 11 333 Core Cell Cycle gene family AT2G26760 54.783 9.49e-130 376.0
Cind6g00718 . 117 290 Core Cell Cycle gene family AT1G18040 53.333 5.21e-53 174.0
Cind6g00722 . 130 375 Core Cell Cycle gene family AT1G18040 60.714 8.01e-95 295.0
Cind6g00723 . 135 391 Core Cell Cycle gene family AT1G18040 57.09 7.25e-89 267.0
Cind6g00828 . 76 331 Core Cell Cycle gene family AT2G22490 47.191 3.16e-66 211.0
Cind6g01289 . 1 64 Core Cell Cycle gene family AT3G48750 51.562 1.36e-12 65.1
Cind6g01371 . 1 294 Core Cell Cycle gene family AT3G48750 85.714 0.0 535.0
Cind6g03314 . 99 217 Core Cell Cycle gene family AT5G10270 64.706 2.51e-47 157.0
Cind6g03357 . 200 361 Core Cell Cycle gene family AT5G11300 33.333 1.60e-20 92.4
Cind6g03959 . 5 304 Core Cell Cycle gene family AT1G73690 70.667 5.32e-145 411.0
Cind7g00699 . 157 245 Core Cell Cycle gene family AT1G76310 68.539 1.08e-37 129.0
Cind7g00194 . 1 327 Core Cell Cycle gene family AT1G76310 57.057 8.82e-108 320.0
Cind7g02177 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 3.39e-44 152.0
Cind7g02189 . 12 304 Core Cell Cycle gene family AT1G76540 30.99 1.03e-40 145.0
Cind7g02195 . 43 323 Core Cell Cycle gene family AT4G37630 33.559 4.27e-47 159.0
Cind7g02704 . 86 195 Core Cell Cycle gene family AT1G49620 38.739 1.77e-17 75.1
Cind7g02858 ACH 36 429 Core Cell Cycle gene family AT1G20610 55.33 5.18e-138 420.0
Cind7g04431 . 18 94 Core Cell Cycle gene family AT5G10270 45.455 8.87e-16 73.9
Cind7g04432 . 278 357 Core Cell Cycle gene family AT5G10270 35.0 6.54e-09 53.9
Cind8g00062 . 181 246 Core Cell Cycle gene family AT3G48750 43.284 3.04e-15 67.0
Cind8g00063 . 20 263 Core Cell Cycle gene family AT1G76540 35.51 1.42e-47 162.0
Cind8g00558 . 220 304 Core Cell Cycle gene family AT1G02970 63.529 4.19e-27 105.0
Cind8g02044 . 18 338 Core Cell Cycle gene family AT5G10270 43.827 3.67e-83 271.0
Cind8g02047 . 26 329 Core Cell Cycle gene family AT5G10270 48.026 3.16e-87 275.0
Cind8g02089 . 1 220 Core Cell Cycle gene family AT5G48820 40.435 7.42e-43 142.0
Cind8g02264 ACH 98 239 Core Cell Cycle gene family AT5G27620 28.477 3.33e-10 57.8
Cind8g02344 . 82 291 Core Cell Cycle gene family AT1G70210 45.161 3.05e-53 175.0
Cind8g02378 . 109 354 Core Cell Cycle gene family AT5G43080 48.387 5.74e-77 233.0
Cind8g02418 ACH 9 282 Core Cell Cycle gene family AT4G34160 51.536 3.29e-99 297.0
Cind8g02451 . 99 195 Core Cell Cycle gene family AT1G49620 49.505 1.69e-24 92.8
Cind8g02647 . 288 397 Core Cell Cycle gene family AT1G02970 25.225 6.63e-06 47.4
Cind8g02957 . 1 294 Core Cell Cycle gene family AT3G48750 32.441 7.02e-49 164.0
Cind8g03333 . 115 226 Core Cell Cycle gene family AT1G70210 35.714 1.88e-11 60.8
Cind8g03287 . 1 325 Core Cell Cycle gene family AT5G06150 52.059 5.49e-98 295.0
Cind8g03288 . 308 412 Core Cell Cycle gene family AT3G11520 51.887 6.31e-35 122.0
Cind8g03435 . 160 288 Core Cell Cycle gene family AT3G48750 40.909 5.73e-29 108.0
Cind9g00199 . 18 366 Core Cell Cycle gene family AT5G10270 51.003 1.11e-118 362.0
Cind9g00213 . 18 364 Core Cell Cycle gene family AT5G10270 50.432 1.18e-118 362.0
Cind9g00090 ACH 15 358 Core Cell Cycle gene family AT5G67260 44.972 4.44e-90 273.0
Cind9g00359 . 1 504 Core Cell Cycle gene family AT5G10270 74.319 0.0 726.0
Cind9g00621 . 18 470 Core Cell Cycle gene family AT5G63610 76.824 0.0 711.0
Cind9g00852 . 248 326 Core Cell Cycle gene family AT5G10270 61.728 1.77e-25 106.0
Cind9g01174 . 18 363 Core Cell Cycle gene family AT5G10270 50.72 3.49e-119 360.0
Cind9g01387 . 20 982 Core Cell Cycle gene family AT3G12280 68.782 0.0 1348.0
Cind9g01388 . 603 865 Core Cell Cycle gene family AT3G12280 51.321 1.44e-76 247.0
Cind9g01389 . 143 353 Core Cell Cycle gene family AT3G12280 62.441 4.16e-77 251.0
Cind9g02077 . 178 366 Core Cell Cycle gene family AT5G10270 44.974 2.02e-50 177.0
Cind9g02826 . 356 497 Core Cell Cycle gene family AT1G02970 68.31 5.26e-66 215.0
Cind9g02952 . 5 46 Core Cell Cycle gene family AT1G20930 57.143 4.36e-07 49.3
Cind9g03484 . 17 372 Core Cell Cycle gene family AT5G10270 45.33 1.53e-95 302.0
Cind9g03496 . 1 288 Core Cell Cycle gene family AT3G48750 36.177 1.82e-59 192.0
Cind9g03741 . 18 367 Core Cell Cycle gene family AT5G10270 50.712 1.20e-114 352.0
Cind9g04085 ACH 25 287 Core Cell Cycle gene family AT2G17620 56.458 1.22e-74 234.0
Cind9g04112 . 5 434 Core Cell Cycle gene family AT5G25380 47.198 1.19e-131 386.0