AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02071 ATGGAATTCAAAGCACGTGATTATAGAAATGAAGATGAATTGTATTTACTTAAACCACTTTCAGTTACTTCACATCCTTTATCATCAATTGCATCGCCAGATAACCAGGACCGTGGGAGCATTGAATTCTTTGATCCATTACGAGGGATATCGAATGAACCTGTCGAAGATATCGCCGTTGCGGAAAAACCCGCTACTAGTCAAGCAACCTCTCATCACTCCGCAAAAGAATGGGCATCTTTTAATAAGCTACTAATGCAGAGATTTCCTGTGCCAAAACAGATATCAGTTTCTGCATTATCGAGCAAAACTATAAAACGCAAGAAGGTAATCGGAGAACTGCAACCAAATAAGCGGTCAGATGAACTGAACGAATCTCAAAAGTTGACTGAAGGAGGACTTAAAACTGTAAGCCAGCAAGAGTATATCAGACGATTGCATGAGCTTAAAGACGAGATTAGGCGGTCTTGGAATTCTGATGATCGCGTAACGTCATTAAATCTGTCAATTAAGGTTGCTAAGCTTCTGATGGACACTTCCGTGGCACAGTTTTATCCAACGTTATTTGTTCTAGCTACTGATATACTGGACATGCTAGGTGACTTGGTATGGGACCGGATTAAGGAAAAAGCCGAGTTTGCAGATAATGGAACTAGAACATGCACTTTATCAGATGACTTTGAAGCAAATAATATATGCATTGAAGCCAGAGAGACCTGCAGTAACTGGTTCAGAAAAATTGCTTCCATTCAAGAGCTTCTTCCACGCATATATCTCGAGCTTGCAATATTTCCATGCTGGCGATTCCTGGATGATCATGTTATGGATAAACTCATGCGATTGGTTATGATGATAAGAGGGATTGCTGATCCGTTGGCATCAGCCTACTGTCGCTTCTTTTTAATTCACTGTGCTCAGAAACTTCCCAACTGTGATACAGGGTACCTGATAAGTTGCATCAGTGACCAAAAAATTGTACTTACGCGGATTGTATCTATGAAAGAAACCAAGTATGGGAACTTTTTAGGAGATCAAAAGTTGCTTATTAGCTTGATGGAACCAACAATCGAGTATACTATGAGATGCATTTTCAAGGATCCAAACCAGGTTGGTGATATGATAGTGAACCTTGATTTAGGGAAGAATCCGTCGGAATTAACTGGAAAAGCTCCTTGGATATCAATTTTTCTCTATTATTTACTACGGGAAATACCAACTGAAATAGTTTGTTCTAGTGCTTTAGAATTTCTTCACCTTGTTGACTGCAGCAGTGATTGTTCGTTTGACCAGTGTTTAAATTACAAGATGCTTGGGTTCAAGCTTTGTGAGGGTATATCACAAGTGAACACAGTTGATGCAGTAATTAATGAAGTAATTCAGGTTGCTACCAGAAGGAAGAGCCTTAATGAGTACTTGAAGATCTTGGACGCTTATATGGATATTATTCTTCAATATAAGATGGATGAATACCTAAGCTCCGTTCTAGGGGAAATATTTGAGAGAGTGTGCAATGAAATGGTTACCGAAGATGAACTGGCTAGCCTGCAATCAATTATTGTGAAGCTGGTCACACATTTTGATGACATGAAGTATGTTTTTGACCTGAACTATTTTGTTGACATATTAGATGTCATGCATGGGAGCTCTAGAAGCATCGTTTGTATGAACATCCTTACTATTGCCACAAGAAATGATCGCATCGATGATCCTACAACGGTAAAACTGCTTTTTGATGTTGCTCAATCTCTTCATGATAGTGTTGATTTTTCAAGCACGAAACAAGATGATAATCAACAGGCAGAGCGTCTGATTTCTCGTTTTGTTGATAAGGTTGATCATGGTACTGATTTGGATCGCCATTTTACATTCTTGGTTGAGTGTCGTGGAACATTCAGTAGCATGAATGATTTGAAGGAGCTCCTTGTTCATTCGAGCAATCTTCTAGCAACCAGAGCTTCGAGAGAGAAAAAAGATAATATCAGTTTCATCAAATCTTGTATCACTTTCAATGAAGTTACGATACCATGTATTCCATCTTATTCCAGGCAGCTAATCTTATATCTTGAAACCGCAGAGGTTTCCCTGTTTGGAGGCTTAATTTCTCATTCGGATGGACTTCTAGATTCCGCAGTCAGCTGCTTACAAGATTTGTTGGTAGATGGGTCGCGGAAATCCAATGAAGATGCTGATGGTATTGCTTCCTTAATGAGAAAGCTGTGCGGCTTCATCTTATTGGTTCCAGGTAATTCAGAACAAGGAGTCACCTACATCCCCAAGAGCATATTATCCTTGCTTGATTCACAATCATGGATTACACCAAAACTAAGGATAAGGGTCTTATGTTCACTTCTTTCATTAGCTGCAACATATTCTCAAAATGAACTCCCATACCATGCAATTCATGAAGAGGTTATTGGCAATGACCGTTTATTTTTTGGTCATGCAATGTATTCTCAAGAACTTGGGTCGTTATCTGGTGTTATACTTAATAACATAGTTGATACTATTGCACAAGAATCTTCACAGTCTGCACGAGGGAAGTTGGCACTTGAAGCTTGCAACTGTATTGCTTCATATTTTAAGGTGAATCACGAGATATCATCTGTATGTTCTAAGTTGATGGAGACCGCCAAATCATGTCTTGGAGCTGATGACAGATATCTGCAGTCGACAATTCATTTTGTGCATAAACAGTCCCCGGTGTCTGTCGGGGGAGATTGA 2721 39.4 MEFKARDYRNEDELYLLKPLSVTSHPLSSIASPDNQDRGSIEFFDPLRGISNEPVEDIAVAEKPATSQATSHHSAKEWASFNKLLMQRFPVPKQISVSALSSKTIKRKKVIGELQPNKRSDELNESQKLTEGGLKTVSQQEYIRRLHELKDEIRRSWNSDDRVTSLNLSIKVAKLLMDTSVAQFYPTLFVLATDILDMLGDLVWDRIKEKAEFADNGTRTCTLSDDFEANNICIEARETCSNWFRKIASIQELLPRIYLELAIFPCWRFLDDHVMDKLMRLVMMIRGIADPLASAYCRFFLIHCAQKLPNCDTGYLISCISDQKIVLTRIVSMKETKYGNFLGDQKLLISLMEPTIEYTMRCIFKDPNQVGDMIVNLDLGKNPSELTGKAPWISIFLYYLLREIPTEIVCSSALEFLHLVDCSSDCSFDQCLNYKMLGFKLCEGISQVNTVDAVINEVIQVATRRKSLNEYLKILDAYMDIILQYKMDEYLSSVLGEIFERVCNEMVTEDELASLQSIIVKLVTHFDDMKYVFDLNYFVDILDVMHGSSRSIVCMNILTIATRNDRIDDPTTVKLLFDVAQSLHDSVDFSSTKQDDNQQAERLISRFVDKVDHGTDLDRHFTFLVECRGTFSSMNDLKELLVHSSNLLATRASREKKDNISFIKSCITFNEVTIPCIPSYSRQLILYLETAEVSLFGGLISHSDGLLDSAVSCLQDLLVDGSRKSNEDADGIASLMRKLCGFILLVPGNSEQGVTYIPKSILSLLDSQSWITPKLRIRVLCSLLSLAATYSQNELPYHAIHEEVIGNDRLFFGHAMYSQELGSLSGVILNNIVDTIAQESSQSARGKLALEACNCIASYFKVNHEISSVCSKLMETAKSCLGADDRYLQSTIHFVHKQSPVSVGGD 906
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02071 906 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 2 898 IPR029705 GO:0005768(PANTHER)|GO:0032456(InterPro)|GO:0032456(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02071 K25731 VPS35 endosomal protein-sorting factor-like
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:312483863 Cind7g03687 Cind-Chr7:229526421 dispersed