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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02098 ATGGCCAAAAGCTCCTTCAAATTGGAACATCCACTAGAGAGGCGACAAGCTGAGGCTGCTCGTATCAGGGAGAAGTATCCCGACAGAATTCCGGTTATTGTGGAGAAGGCTGAGAGAACCGACATACCTGACATTGACAAGAAAAAATATCTGGTTCCTGCTGATCTGACAGTTGGACAGTTTGTGTATGTTGTGAGAAAGAGGATTAAGCTGAGTGCAGAAAAGGCCATCTTTATCTTTGTCAAGAACATCCTGCCACCTACTGCTGCAATGATGTCTGCTATATACGAAGAAAACAAAGACGAAGATGGTTTTCTTTACATGACTTACAGTGGGGAGAATACGTTTGGATTACTTTGA 360 43.06 MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLL 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02098 119 Gene3D - 1 118 - -
Cind3g02098 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Cind3g02098 119 FunFam Autophagy-related protein 1 117 - -
Cind3g02098 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Cind3g02098 119 CDD Ubl-ATG8 12 114 - -
Cind3g02098 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 GO:0006995(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02098 K08341 GABA(A) receptor-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
67637 Cind2g01445 Cind3g02098
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr2:341587656 Cind3g02098 Cind-Chr3:313824904 dispersed
Cind Cind-Chr3:313824904 Cind6g02480 Cind-Chr6:133039459 dispersed