AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02103 ATGGATAATGGAAAGCGTTTGGAATCAATACAGAAATCCGTTAAAAATACCGATTTTAATCACAGTTCCAAAAACCCTAACAAGATTTATTCTAATCATTCACTGCACTCATCTTGGTCACCCTTAAAGAAAAGAAAGCCTCCGCCTTTGGTAAGCTTGTGTCTTGGAATCATAGGCAAACATCTCGAGGATATCATTCATGATTTAGACGTTTTAACCACTTTTCCGCCAGATATTAAGATGGCTATAGCAGCCATTGCAAGAAGAAGAAAGTTGCTAAATGATGACGTGATCGTTGCATTGGCAGAGAGCTCATGGGAAATTCTTGATTTGTCAGATTCGGAAGTCTCTGATATTGGCTTGTCAAAGGTGATCAAGATTTGCAGAAATGTGAGAGCCGTGGACATAAGTCGTTGCAGCAAAATCACATCATTTGGTGTTTCGGAACTTGTCAAGCATTGTCTGTGTCTTGAAATTTTGAGATGGGGAGGATGTCCAAGGAGTGAACACACTGCGCGCAGCTCTATAAGCATCTTGAAACCAACATTGAAAGATGTTGATGGGGATTCATGGGAGGAACTTGATGCCACAGAAATTGTACAACGTTGGCTTGTATGGCCAAAAGTTGATAAAGATTCGTGGGAGACTCTATCAACAGAATGCCCACGTATTATAGTGAATCCTAAACCATCACTCTTTGGCCACAAAGGGATTGATATCCCTAGGCATGCATTACCTGTTGAATTACCAATTGCTGAGAGATTTAGACTTGCATTTGTTGAAAGAGATGCTAGATTAGCACCAAAACGGGCTAAAAATGCTAGACAGAGACAACGAAGGGCAAAGCAAGAGTGGTCTTATGACATGTGCTGGAAATTTCTGGGACCCACTTCTTGTATGAAGGCTGCAGCGCTTGGACTCGGAGGATTAGCATGTTCTAGAGCATTTCTGTCCCAAAAGTTTGTAGGCGTAGAAATGGATGACGAATATGGTATGTACAGAAGAGGCAGCAGTGGATGGTCATCCATGATTGGAATTGAAGAACTTCAAGAAACTGATGTTTGGTCTGTTTATAATGGAAGAAATGATTTCGACTCAAAATCTTTGAAGTCAAAGTCAAAAGGAGGATCATCTTCTAGTCTGACTTCAAGAACCAACTCTATATCAAGTGCAGCCAGAATGATTCCTAGGCATGGTACCACCAATCCTGACACAGAATCTCGGATTCCTCGAAGACAATCAGCACCTGTCAAAGTTCCTGATTGGTCCAAAATCTATGGAAAGTCAAACAGATCATCACAGAATTCTGCATTTCTTGATTATGGTAATGATTACGGTCCTGATTATGACGATGATGATGATGATGGTGATGATGATGTGGGCATGATGCCTCCACATGAATGGATTGCACAGAAGTATGCCAGGAGTCAAATTTCATCGTTTTCGGTCTGTGAAGGCGCTGGAAGAACACTTAAAGGAAGAGATCTCAGTAGGGTAAGAAATGCTGTCTTGACGAAAACTGGTTTTCTTGAATAA 1536 41.08 MDNGKRLESIQKSVKNTDFNHSSKNPNKIYSNHSLHSSWSPLKKRKPPPLVSLCLGIIGKHLEDIIHDLDVLTTFPPDIKMAIAAIARRRKLLNDDVIVALAESSWEILDLSDSEVSDIGLSKVIKICRNVRAVDISRCSKITSFGVSELVKHCLCLEILRWGGCPRSEHTARSSISILKPTLKDVDGDSWEELDATEIVQRWLVWPKVDKDSWETLSTECPRIIVNPKPSLFGHKGIDIPRHALPVELPIAERFRLAFVERDARLAPKRAKNARQRQRRAKQEWSYDMCWKFLGPTSCMKAAALGLGGLACSRAFLSQKFVGVEMDDEYGMYRRGSSGWSSMIGIEELQETDVWSVYNGRNDFDSKSLKSKSKGGSSSSLTSRTNSISSAARMIPRHGTTNPDTESRIPRRQSAPVKVPDWSKIYGKSNRSSQNSAFLDYGNDYGPDYDDDDDDGDDDVGMMPPHEWIAQKYARSQISSFSVCEGAGRTLKGRDLSRVRNAVLTKTGFLE 511
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02103 511 Gene3D Ribonuclease Inhibitor 79 248 IPR032675 -
Cind3g02103 511 MobiDBLite consensus disorder prediction 445 460 - -
Cind3g02103 511 MobiDBLite consensus disorder prediction 366 464 - -
Cind3g02103 511 Pfam Senescence regulator 347 511 IPR007608 -
Cind3g02103 511 SUPERFAMILY RNI-like 104 183 - -
Cind3g02103 511 MobiDBLite consensus disorder prediction 371 409 - -
Cind3g02103 511 PANTHER EMB|CAB72159.1 342 509 - -
Cind3g02103 511 MobiDBLite consensus disorder prediction 426 440 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02103 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1729738 Cind Cind3g02103 Cind-Chr3:314233484 Cind6g04067 Cind-Chr6:169853482
1768372 Cind Cind3g02103 Cind-Chr3:314233484 Cind2g03394 Cind-Chr2:25330083