AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02124 ATGATAAAATTGATAAAACAGCTTCGGATTTCATTCGGTGCTCCGTTTCTTTGGCTCGTTTGCTTGATTTACTTCACACAGGGTTTTAGATCTTTTGTTTGGACCGCAGTTTCATACCAGCTAAAAGACAGATTAAAGCTATCGCCTTCTGCTTCTCAGTTTGTAACATCCATATCTTTTTTTCCATGGAGCATAAAACCAATATACGGAATTATATCAGATTGTATCCCAGTGTATGGAAAGAAAAGAGTTCCTTATTTAGTCATTGCGACACTGCTTTCACTCTTCCCATGGGTAATTCTTGGCATTCAGGAATCCGCAAGAAGTTCTAAACGTCAACTCATGATCTTCTTGTTAATTCAAAATCTAGGATCTGCAATGTCAGATGTTGTGATTGATGCAATGATTGCAGAAGCAGCAAGGCACGAAAAGGCCAAGTATGCTGGCGACTTGCAATCACTATCTTGGATGACAATGGCTTTAGGGGGGATCTGTGGGAGTTTGTTTGGAGGATATGCACTAAATAGCATTCAAATGGGCCACATCTTTTTGCTTTTTTCTTTTTTACCAACTGTACAACTATTTTCATGTGGTTTTGTGACTGAGATTCCAATAAGCAGTCCACAACTGCCAGAATTTTCTACTTCAAATGATCCCGACACACATAATGGAAGTCTACCAGATGAAAGTAGATTATCATTCGGATCACCTAGATCTCCTAAATCACCTAAAGCCGGTACTTTGATGAGAAAGAGGAGCCATAAAAGTAGCAAGAAAGAAATTTTGGATATAAGCAGAATTCAGATTCTTGAAGAAGATGAATCTTTGCCATTACACTGGTTTCGGTCTTTGAAAATGGCTGGTTATTCTTTGTTCAAAGCTTTTCGACGCCCGATTATCCTGAGACCAATGGCTTGGTTTTTCCTAGCGCAGGTAACAATTCCAAACCTCTCAACAGTCATGTTCTACTACCAGACAGAAGTTCTTAATCTAGACGCTTCCTTTTTGGGTACTGCTCGTGTCATTGGGTGGATAGGCCTCATGCTTGGAACTTTCACTTATAATCGCTTTTTAAAGAAGATCAAGTTGAGAAAGATTCTTATGTTGTCTCATGTTACTTTGTCAATCTCAACACTTATAGACATTGTATTGGTTTATAGAGTAAATCTTTCGTTTGGCATATCCGATGAAATAATGGTGTTGTTTGGGTCTGCTCTATCGGATGCAGTCCATCAATTCAAGTTCATGCCTTTCCTGATCCTTTCTGGACAACTCTGCCCGCCTGGAATAGAAGGGACACTATTTGCCCTCTTCATGTCGATAAACAACTTTGGGTCCACAATGAGTTCAGTAGTTGGTGCTGGTTTGGCTTCAGTTCTAGACATATCTTCGGGTTCTTTTGATAATCTTAGTCTTGGAATTAGCATTCAAGTCATCTGCACATTTATACCGGTTGTTTTCCTGTTTTTAATACCAAAGGATGCTACAGGGATATCAACATAA 1503 39.19 MIKLIKQLRISFGAPFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLKLSPSASQFVTSISFFPWSIKPIYGIISDCIPVYGKKRVPYLVIATLLSLFPWVILGIQESARSSKRQLMIFLLIQNLGSAMSDVVIDAMIAEAARHEKAKYAGDLQSLSWMTMALGGICGSLFGGYALNSIQMGHIFLLFSFLPTVQLFSCGFVTEIPISSPQLPEFSTSNDPDTHNGSLPDESRLSFGSPRSPKSPKAGTLMRKRSHKSSKKEILDISRIQILEEDESLPLHWFRSLKMAGYSLFKAFRRPIILRPMAWFFLAQVTIPNLSTVMFYYQTEVLNLDASFLGTARVIGWIGLMLGTFTYNRFLKKIKLRKILMLSHVTLSISTLIDIVLVYRVNLSFGISDEIMVLFGSALSDAVHQFKFMPFLILSGQLCPPGIEGTLFALFMSINNFGSTMSSVVGAGLASVLDISSGSFDNLSLGISIQVICTFIPVVFLFLIPKDATGIST 500
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02124 500 CDD MFS-FBT 18 489 - -
Cind3g02124 500 Gene3D MFS general substrate transporter like domains 15 491 IPR036259 -
Cind3g02124 500 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 6 495 IPR039309 -
Cind3g02124 500 NCBIfam folate-biopterin family MFS transporter 19 493 IPR004324 GO:0016020(InterPro)
Cind3g02124 500 MobiDBLite consensus disorder prediction 210 237 - -
Cind3g02124 500 Pfam BT1 family 27 493 IPR039309 -
Cind3g02124 500 MobiDBLite consensus disorder prediction 210 254 - -
Cind3g02124 500 SUPERFAMILY MFS general substrate transporter 17 493 IPR036259 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02124 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1718239 Cind Cind1g02875 Cind-Chr1:344300641 Cind3g02124 Cind-Chr3:315212382
1729755 Cind Cind3g02124 Cind-Chr3:315212382 Cind6g00838 Cind-Chr6:211970019