Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cind3g02129	ATGTTGTCTTTCATCTCATCCACAACACCGACACAAACACCAACCTTAACTAACAGAACCACCACAAGCGCCGCTTTTCTCAAACCGCATCCTATACATCTCAACATAACCGGGTTTTGTTCATCTAAACCGGTTTGTGTCATTTCTGATAATTCAATGTCGGCGGTTCATGTCAATGATGAACCGGCGGCGGTTCATGAGCGGCCTGATTTATTTGGCCGGTTTGGGAAATATGGTGGAAAGTATGTTCCTGAGACATTAATGTTTGCTTTAACTGAACTTGAATCTGCTTTTAAGGCTCTTGCTACTGACCACCAGTTTCAGAAGGAATTGGATGGGATATTGAAGGATTATGTTGGTAGGGAAAGCCCTCTTTATTTTGCAGAAAGACTTACCGAACACTATAAACGTACCAATGGTGAAGGACCAGAAATATACCTTAAGAGGGAAGATCTTAACCATACTGGTGCACATAAGATCAATAACGCGGTTGCACAAGCGTTGTTGGCCAAGAAGTTAGGTAAAGAGCGTATCATTGCTGAAACTGGTGCTGGTCAGCATGGAGTTGCAACCGCAACTGTATGTGCGCGGTTTGGGTTGCAGTGTATCATTTATATGGGTGCTCAAGATATGGAAAGACAAGCTCTTAACGTTTTCAGAATGCGGCTCCTTGGAGCAGAGGTCAGAGCAGTTCATTCGGGGACAGCCACACTAAAGGACGCCACATCAGAGGCTATACGTGACTGGGTGACCAACGTGGAAACAACCCATTATATCTTAGGTTCTGTTGCGGGCCCACATCCCTACCCCATGATGGTACGCGAGTTCCATGCAGTAATTGGTAAAGAAACAAGAAAACAAGCATTGGAAAAATGGGGTGGAAAACCAGATGTGCTGGTTGCGTGTGTTGGTGGAGGATCAAATGCTATGGGCCTATTTCATGAGTTTGTTGATGACAAAGAAGTTAGGTTAATTGGTGTAGAGGCTGCGGGTCATGGTTTAGATAGTGGAAAACATGCAGCAACTTTAACACTAGGTGAGGTTGGAGTGTTGCATGGGGCTATGAGCTATTTGTTGCAAGATGACGATGGTCAAATCATCGAGCCTCACTCTATTAGTGCAGGGCTGGACTACCCAGGAGTGGGACCAGAGCATAGCTTTTTGAAAGACATAGGCCGAGCCGAATATCATAGCGTCACGGACGTGGAAGCATTGGAAGCTTTTAAAAGACTGTCTAGACTAGAGGGTATAATCCCGGCACTCGAGACATCTCATGCACTCGCCTATCTTGAGAAACTGTGTCCAACTTTACCTAATGGAACCAAGGTTGTGCTGAACTGTAGTGGTAGAGGAGACAAAGATGTTCATACTGCCATCAAGTATCTGCAGGTTTGA	1395	45.16	MLSFISSTTPTQTPTLTNRTTTSAAFLKPHPIHLNITGFCSSKPVCVISDNSMSAVHVNDEPAAVHERPDLFGRFGKYGGKYVPETLMFALTELESAFKALATDHQFQKELDGILKDYVGRESPLYFAERLTEHYKRTNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKEVRLIGVEAAGHGLDSGKHAATLTLGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYHSVTDVEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKYLQV	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cind3g02129	464	CDD	Trp-synth-B	89	457	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Cind3g02129	464	Pfam	Pyridoxal-phosphate dependent enzyme	121	449	IPR001926	-
	Cind3g02129	464	FunFam	Tryptophan synthase beta chain	121	275	-	-
	Cind3g02129	464	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	56	463	IPR023026	GO:0000162(InterPro)\|GO:0000162(PANTHER)\|GO:0004834(PANTHER)\|GO:0004834(InterPro)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Cind3g02129	464	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	152	166	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Cind3g02129	464	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	69	462	IPR036052	-
	Cind3g02129	464	FunFam	Tryptophan synthase beta chain	276	455	-	-
	Cind3g02129	464	NCBIfam	tryptophan synthase subunit beta	73	461	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Cind3g02129	464	Hamap	Tryptophan synthase beta chain [trpB].	68	462	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Cind3g02129	464	PIRSF	Trp-syn-beta	61	464	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Cind3g02129	464	Gene3D	-	120	455	IPR036052	-
	Cind3g02129	464	Gene3D	-	75	277	IPR036052	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cind3g02129	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	67189	Cind1g01752	Cind3g02129

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	1728773	Cind	Cind3g00946	Cind-Chr3:4848970	Cind3g02129	Cind-Chr3:315835740
	1728774	Cind	Cind3g00947	Cind-Chr3:4869951	Cind3g02129	Cind-Chr3:315835740
	1728781	Cind	Cind3g00954	Cind-Chr3:5025959	Cind3g02129	Cind-Chr3:315835740
	1764933	Cind	Cind1g03450	Cind-Chr1:226776206	Cind3g02129	Cind-Chr3:315835740
	1770686	Cind	Cind4g05065	Cind-Chr4:287667855	Cind3g02129	Cind-Chr3:315835740
	1777027	Cind	Cind9g04209	Cind-Chr9:145333404	Cind3g02129	Cind-Chr3:315835740
	1778257	Cind	Cind1g01752	Cind-Chr1:373247923	Cind3g02129	Cind-Chr3:315835740