AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g02160 | ATGGTGAAGACACCGTTTGGATGTGAACCTGTTGTCATGCCATCAAGAAAGAGGGATTATAGGGTCACTAATATGATAGAAGAAAGCAAACGTCGTATACGCGATGTCGTTTTCAACTTTATTGATTCTCGCTATTTTAATGTCTTTGCTACTGTCAGCGGTAATCGTGTCACAGTGTACCAATGCCTTGAAGGTGGCGTTATTGCTGTACTTCAGTCCTACATCGATGAAGATAAGGATGAGTCTTTCTACACTGTGAGCTGGGCATGTGATGCTGACGGGCGACCATTGCTAGTTGCTGGAGGAATTAATGGCATAATCCGTGTCATTGATGCTGGAAATGAGAAGATACACAAGAGTTTCGTTGGTCACGGGGACTCGGTAAATGAAATCAGAACACAAGTACTAAGACCTTCTCTTGTGCTTTCTGCAAGTAAAGATGAATCTGTCCGTTTGTGGAATGTTGAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGCAATGAAGTGTTGAGTGTGGATTTTCATCCTTCAGATATATATCGTATTGCCAGTTGTGGTATGGATAACACCGTAAAGATATGGTCAATGAAAGAATTTTGGACGTATGTCGAGAGGTCTTTTACATGGGAGGGACTACCTTCACAATTTCCTACAAAATATGTGCAGTTTCCGGTCTTACTTGCTTCAATCCATACAAATTATGTCGACTGCAATAGGTGGCTTGGCGATTTCATGCTATCTAAGAGCGTTGATAACGAGTTCATATTATGGGAACCAAAGATGAAAGAGCACTCCCCAGGAGAGGGTACTGTAGATATCATTCAAAAATATCCCGTCCCTGAGTGTGACATTTGGTTTATTAAGCTTTCATGTGATTTCCATTTCAACGCAGCATCTATAGGGAACAGGGAAGGGAAAATCTTTGTATGGGAATTGCAGAGTAGCCCCCCTACTCTCATTGCAAGGTTATCTCATGTTCAATCCAAATCTCCCATCAGGCAAACTGCTATGTCGTTTGATGGAAGCACAATTCTTAGTTGCTGTGAAGATGGCACTATTTGGCGTTGGGATACAGTTGCAACCTCCTAG | 1104 | 42.03 | MVKTPFGCEPVVMPSRKRDYRVTNMIEESKRRIRDVVFNFIDSRYFNVFATVSGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGRPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQVLRPSLVLSASKDESVRLWNVETGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGLPSQFPTKYVQFPVLLASIHTNYVDCNRWLGDFMLSKSVDNEFILWEPKMKEHSPGEGTVDIIQKYPVPECDIWFIKLSCDFHFNAASIGNREGKIFVWELQSSPPTLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATS | 367 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g02160 | 367 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 167 | 202 | - | - | |
| Cind3g02160 | 367 | PRINTS | G protein beta WD-40 repeat signature | 349 | 363 | IPR020472 | - | |
| Cind3g02160 | 367 | PRINTS | G protein beta WD-40 repeat signature | 187 | 201 | IPR020472 | - | |
| Cind3g02160 | 367 | PRINTS | G protein beta WD-40 repeat signature | 141 | 155 | IPR020472 | - | |
| Cind3g02160 | 367 | SMART | WD40-4 | 114 | 154 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | SMART | WD40-4 | 64 | 111 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | SMART | WD40-4 | 321 | 362 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | SMART | WD40-4 | 157 | 200 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | FunFam | polycomb group protein FIE1 | 16 | 365 | - | - | |
| Cind3g02160 | 367 | Pfam | WD domain, G-beta repeat | 330 | 362 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | Pfam | WD domain, G-beta repeat | 119 | 154 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | Pfam | WD domain, G-beta repeat | 169 | 200 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 121 | 158 | - | - | |
| Cind3g02160 | 367 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 167 | 202 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | PANTHER | POLYCOMB PROTEIN | 14 | 363 | IPR051243 | GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER) | |
| Cind3g02160 | 367 | Gene3D | - | 16 | 365 | IPR015943 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 121 | 163 | IPR001680 | GO:0005515(InterPro) | |
| Cind3g02160 | 367 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 141 | 155 | IPR019775 | - | |
| Cind3g02160 | 367 | SUPERFAMILY | WD40 repeat-like | 27 | 362 | IPR036322 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g02160 | K11462 | polycomb protein EED |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 1716685 | Cind | Cind1g01110 | Cind-Chr1:302598548 | Cind3g02160 | Cind-Chr3:317040261 | |
| 1716687 | Cind | Cind1g01112 | Cind-Chr1:302826260 | Cind3g02160 | Cind-Chr3:317040261 | |
| 1716691 | Cind | Cind1g01116 | Cind-Chr1:302969592 | Cind3g02160 | Cind-Chr3:317040261 | |
| 1716693 | Cind | Cind1g01118 | Cind-Chr1:303007542 | Cind3g02160 | Cind-Chr3:317040261 | |
| 1720221 | Cind | Cind1g05092 | Cind-Chr1:63728480 | Cind3g02160 | Cind-Chr3:317040261 | |
| 1720223 | Cind | Cind1g05094 | Cind-Chr1:63457782 | Cind3g02160 | Cind-Chr3:317040261 | |
| 1729780 | Cind | Cind3g02160 | Cind-Chr3:317040261 | Cind7g04091 | Cind-Chr7:26510802 | |
| 1768389 | Cind | Cind3g02160 | Cind-Chr3:317040261 | Cind6g02898 | Cind-Chr6:65492731 |