AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02164 ATGGATGCTATCACTTCTGCGGTTATTGATGGTACTAAAACACTCATTAAGTTCACGTGCTCAAGAATTAAGACCATTTCCGAGTATGAAGATAAGATTCGTGATCTTCGGGAAGAGATTGTGAATCTTACTAGCAAAAAGATGGAGATTGAAGAAGATGTCACGTTAGCCAAACTAGAAGGGAAAAAACCAAAACCGCAAGTGAAAGAATATCTGAAGAAGGTTTCTCAAGCAGAAGAGACTGTAATGCCACTGCTAGCAAAGGCGGATGAATATGCTGATGGTTGGGGATCCAATATTATGCATCAGTACAAGCACTGCTGCAGAGTTGCAAAGATACTTAATCAGGTAAAAGACCTCAATTCTCTTCATTTTGAAACTGTCACAAGTAATGGATGCTCTCCAATAAAAGAAGTGGAGGAAATGGCGGTGCCTTCACTTGTGGGTCACAGGGCAAAATCAGATATGAAGAAACTATTGAATATCTTGAACAAGGACGACGACAATATCAGAAAGATAGCTGTGTGGGGGAAGGGTGGCATAGGGAAAACAACACTAGTCAAGAATTTGAACAATGAGCTCTGCTTTTCACACCCAAATACTTTTGCAATAATCATATGGGTTCAAGCGTCCAGGGGATCGAATTTGAGCACTATACAGTCTCAGATTGCAAAAAGAATTCATCTAAAGCCAGATCCACGAGACACCCCTCACAGTTTATCTAACAGAATTCTTCGAAGACTGAAGATGAGAAGAAAGATTCTCCTGATCCTTGATGATGTGTGGGAAAAGATTGATCTGGATGCTGTAGGTATTCCGTCAAGGGATCCTTGTTGCAAGATCCTCCTTAACAACTCGATCTTTTGA 867 40.6 MDAITSAVIDGTKTLIKFTCSRIKTISEYEDKIRDLREEIVNLTSKKMEIEEDVTLAKLEGKKPKPQVKEYLKKVSQAEETVMPLLAKADEYADGWGSNIMHQYKHCCRVAKILNQVKDLNSLHFETVTSNGCSPIKEVEEMAVPSLVGHRAKSDMKKLLNILNKDDDNIRKIAVWGKGGIGKTTLVKNLNNELCFSHPNTFAIIIWVQASRGSNLSTIQSQIAKRIHLKPDPRDTPHSLSNRILRRLKMRRKILLILDDVWEKIDLDAVGIPSRDPCCKILLNNSIF 288
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02164 288 Pfam NB-ARC domain 154 283 IPR002182 GO:0043531(InterPro)
Cind3g02164 288 Gene3D - 136 284 IPR027417 -
Cind3g02164 288 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 19 283 IPR050905 -
Cind3g02164 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 282 IPR027417 -
Cind3g02164 288 PRINTS Disease resistance protein signature 248 262 - -
Cind3g02164 288 PRINTS Disease resistance protein signature 172 187 - -
Cind3g02164 288 Coils Coil 26 53 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02164 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1729784 Cind Cind3g02164 Cind-Chr3:317107164 Cind3g05376 Cind-Chr3:260441426