AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g02397 | ATGGGTACTCTATTCAAAGCGAGCTTGTTCATGTCGTTCCTGCTGTTTCTTGTCGCACCTACTGCTTATTCAGCTGCTAATGGTAAATTGGTTAGAGTTGGACTAAAGAAGAGGAAAATCAACCAATTGAACCAACTTAGTGGACACGCGGGCTCAAAAGAACGATATGCTGGAAGAAACTCTGGTATCCTTGGTAATATCAGGGACTCCGATAGTGATGCTATTGCTCTAACCAACTACATGGATGCTCAGTATTATGGTGAAATTGGTGTTGGGAAATCTGCAGCAATTCAATATGGAACTGGCTCGATCTCAGGTTTCTTTAGCCAAGATTCTATCACACTTGGTGATCTTGTTGTCAACGAGCAGGATTTTATTGAGGCAACCAAAGAGCCTGGAGTAACTTTCTTGGCAGCGAAATTTGATGGTATTCTTGGCCTTGGGTTTCAAGAGATATCTGTTGGGGAAGCTGTTCCTGTTTGGTACAACATGGTGGAACAAGGTCTTGTTCAAGAACCTATTTTTTCATTTTGGCTTAATCGCAATGTCGAAGACAATGAAGGGGGTGAACTTGTGTTTGGTGGGATTGATGCTAATCATTTCAAGGGTGATCATACATATGTCCCGGTAACTCAAAAAGGCTATTGGCAGTTCGACATGGGAGATGTCCTTATTGGTGATAACACAACTGGATTTTGCTCCGATGGTTGTGCAGCAATTGCCGACTCTGGAACCTCTTTGATAGCTGGTCCAACGGCTGTTATTACTCAAATCAATCAAGCCATTGGTGCTGCGGGTGTAATGAGCCAACAATGCAAGACAGTGGTCGATAATTATGGAAAGACTATTATTGAGATGCTCTTAACTGAGACACGGCCTGATAAAATCTGCTCTCAAATGAAGCTATGCACCTTTGATGGATCTCATGATACCAGCATGATCATTGAGAGCGTGGTTGACATGAACAATGGTAAATCTTCTGGTTTGCGTGATGAGATGTGTAACTATTGTGAGATGGCAGTTGGTTGGATGGAAAACCAGATCAAGAGGAACCAAAGTGAAAAAGATATAATTCACTATGCTGACCAGCTCTGCGAGAAGTTGCCAAGTCCAATGGGAGAATCTGGAGTTGACTGCAACAAAATTTCCTCCATGCCTAATATCGCTTTTACTATTGGTGGTAAAACGTTTGACCTCTCCCCTAAAGAGTATATCTTGAAAATTGGCGAGGGAAAAGCAGCACAGTGCATCAGTGGATTCACTGCTATGGATGTGGCACCTCCTCGTGGACCTCTATGGATCCTGGGTGACATTTTCATGGGTAAATACCATACGGTATTCGACTATGGTAACTCACGAGTTGGATTTGCAGAAGCAGCTTAA | 1383 | 42.88 | MGTLFKASLFMSFLLFLVAPTAYSAANGKLVRVGLKKRKINQLNQLSGHAGSKERYAGRNSGILGNIRDSDSDAIALTNYMDAQYYGEIGVGKSAAIQYGTGSISGFFSQDSITLGDLVVNEQDFIEATKEPGVTFLAAKFDGILGLGFQEISVGEAVPVWYNMVEQGLVQEPIFSFWLNRNVEDNEGGELVFGGIDANHFKGDHTYVPVTQKGYWQFDMGDVLIGDNTTGFCSDGCAAIADSGTSLIAGPTAVITQINQAIGAAGVMSQQCKTVVDNYGKTIIEMLLTETRPDKICSQMKLCTFDGSHDTSMIIESVVDMNNGKSSGLRDEMCNYCEMAVGWMENQIKRNQSEKDIIHYADQLCEKLPSPMGESGVDCNKISSMPNIAFTIGGKTFDLSPKEYILKIGEGKAAQCISGFTAMDVAPPRGPLWILGDIFMGKYHTVFDYGNSRVGFAEAA | 460 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g02397 | 460 | ProSiteProfiles | Saposin B type domain profile. | 267 | 307 | IPR008139 | - | |
| Cind3g02397 | 460 | SUPERFAMILY | Saposin | 268 | 369 | IPR011001 | - | |
| Cind3g02397 | 460 | FunFam | Vacuolar aspartic proteinase | 350 | 459 | - | - | |
| Cind3g02397 | 460 | ProSiteProfiles | Peptidase family A1 domain profile. | 51 | 457 | IPR033121 | - | |
| Cind3g02397 | 460 | Pfam | Saposin-like type B, region 2 | 270 | 303 | IPR008138 | - | |
| Cind3g02397 | 460 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 239 | 250 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Cind3g02397 | 460 | SMART | sapb-4 | 332 | 416 | IPR008139 | - | |
| Cind3g02397 | 460 | SMART | sapb-4 | 231 | 303 | IPR008139 | - | |
| Cind3g02397 | 460 | FunFam | Lysosomal aspartic protease | 92 | 265 | - | - | |
| Cind3g02397 | 460 | Pfam | Saposin-like type B, region 1 | 333 | 369 | IPR007856 | GO:0006629(InterPro) | |
| Cind3g02397 | 460 | ProSiteProfiles | Saposin B type domain profile. | 330 | 371 | IPR008139 | - | |
| Cind3g02397 | 460 | Gene3D | - | 267 | 369 | - | - | |
| Cind3g02397 | 460 | Gene3D | Acid Proteases | 91 | 195 | IPR021109 | - | |
| Cind3g02397 | 460 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 92 | 459 | IPR001461 | GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(InterPro)|GO:0006508(PANTHER) | |
| Cind3g02397 | 460 | Gene3D | Acid Proteases | 196 | 460 | IPR021109 | - | |
| Cind3g02397 | 460 | PRINTS | Pepsin (A1) aspartic protease family signature | 433 | 448 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Cind3g02397 | 460 | PRINTS | Pepsin (A1) aspartic protease family signature | 239 | 250 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Cind3g02397 | 460 | PRINTS | Pepsin (A1) aspartic protease family signature | 189 | 202 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Cind3g02397 | 460 | SUPERFAMILY | Acid proteases | 10 | 459 | IPR021109 | - | |
| Cind3g02397 | 460 | Pfam | Eukaryotic aspartyl protease | 92 | 459 | IPR033121 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g02397 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 67285 | Cind1g03033 | Cind3g02397 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:350974880 | Cind6g03457 | Cind-Chr6:171519089 | dispersed | |
| Cind | Cind-Chr7:158613294 | Cind3g02397 | Cind-Chr3:350974880 | transposed | |
| Cind | Cind-Chr7:158609256 | Cind3g02397 | Cind-Chr3:350974880 | transposed | |
| Cind | Cind-Chr7:16237814 | Cind3g02397 | Cind-Chr3:350974880 | transposed | |
| Cind | Cind-Chr1:348971188 | Cind3g02397 | Cind-Chr3:350974880 | wgd |