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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02413 ATGTCTGGTGAGTTGACTCTGCTTCGTGCCGCCAATGTTGATACTGAAGCATTGGCTCGTGTTGCATTCAAACATGGCTTACATAGGTTTCTTAGGCACCAAGATCCTCTACTCGAGGGACGGGTACAAGAACTTATGGAAGGAATCAAACAGTATCCATTGCACTCCCATGGTTTAATCAACTCACCTAAGATACTTGCAGACATTGTGGAGTCTTTAATTGGTGCAGTCTATGTGGACACCAATTTTTCGGTCGATGCTACATGGGAGGTGGTGAAGAGCTTGTTACAACCTTTGACAACCCCAGAGAACCTCAAGCTAAACCCCGTGACAAAGTTGAATGAAACGTGCCAAAAGATCGGGATCAAGTTAGAATACAAAAATTTATGGGTCGAGTCGGGGGAGATTGAGATATACAATGGTAACGAGTTAATCGGGAAAGGAAACTACAAGAAAAAGAAAACAACAGCGAAGAACAAAGCAGCAGCCGATGCATACGTGAATCTTGTCAAACAATTGGGTCTCAAAGATGATACAGAATTTGATGAATTATTACTTTAA 561 42.07 MSGELTLLRAANVDTEALARVAFKHGLHRFLRHQDPLLEGRVQELMEGIKQYPLHSHGLINSPKILADIVESLIGAVYVDTNFSVDATWEVVKSLLQPLTTPENLKLNPVTKLNETCQKIGIKLEYKNLWVESGEIEIYNGNELIGKGNYKKKKTTAKNKAAADAYVNLVKQLGLKDDTEFDELLL 186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02413 186 Pfam Double-stranded RNA binding motif 109 166 IPR014720 -
Cind3g02413 186 PANTHER DICER-RELATED 2 175 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Cind3g02413 186 CDD RIBOc 3 105 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g02413 186 Gene3D - 105 172 - -
Cind3g02413 186 ProSiteProfiles Ribonuclease III family domain profile. 1 82 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g02413 186 SUPERFAMILY RNase III domain-like 3 101 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g02413 186 Gene3D Ribonuclease III domain 1 104 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g02413 186 Pfam Ribonuclease III domain 2 81 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g02413 186 SUPERFAMILY dsRNA-binding domain-like 64 169 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02413 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:350271928 Cind8g00127 Cind-Chr8:250935732 dispersed
Cind Cind-Chr3:350268930 Cind3g02413 Cind-Chr3:350271928 tandem