Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g02418 | ATGATCAAGCAATTTCTTAAAAAGATTCCCAAGAAATCAGCCTCAAAATCATCACACCATAATGATGAAAAACCTGATTCTAGCTCGAATAAGGCGAGTATTTCGAGTGTTAAGTCTAGTGAAGTGGTGCAGATAGTTAATGAAGTTTCTTATGAAGCTTTGCCTAGTTTTCGAGACGTATCAAGTTCCGAAAAACATAGTTTGTTTATCAAGAAAATGAGTATGTGTTGTGTAGTGTTTGATTTTAACGACCCGTTAAAGAGTTTGAAAGAAAAAGATGTAAAGAAACAAACTTTACTTGAACTAGTTGAATATGTTTCTTCAGTAAGTTCCAAGTTTAATGAGGTTACAATTTTGGAGATAACGAAAATGGTGTCTGCTAATTTGTTTCGGTCATTACCTAACTTAAGTAATGAAAGTAAGTTGCCGGATATATATGATCAAGAAGATGACGAGTTTGTTATGGATCCTTCATGGCCACATCTTCAAGTTGTGTATGAGTTTTTGCTTAGGTTTGTGGCCTCATCAGAGACTGATGCCAAAATTGCGAAAAAGTATATAGATCAGTCGTTCGTATTAAAATTGCTTGATCTTTTTGATTCTGAGGATCAAAGGGAAAGGGAGTATTTAAAGACGATTATGCATAGGATTTATGGCAAGTTTATGGTGCATCGGCCGTTTATTAGAAAAGCGATTAATAATATATTTTATCATTTTATTCTTGAGTCTGGTAAGCATAACGGGATAGCGGAAATACTTGAGCTTTTAGGTAGTATAATCAATGGATTTACGATGCCATTGAAGGAAGAACATAAGGTGTTTCTTGTTCATGTGTTGATTCCACTTCATAAGCCGAGGTATTTGTCTATGTATCAGCAGCAACTTGTGTATTGTATTAGTCAGTTTGTTGAAAAAGATTGTAAGCTAGCTGATACGGTGATTAGGGGGCTGTTAAAGTATTGGCCTGTGACTAATAGTGCTAAAGAAGTGATGTATCTTAGTGAATTGGAGGAAATTCTTGAAGTTACAAAGGCTGCAGAATTTGAAAAGTGTATGGTTCCTTTGTTTCGTCAGATTGGTCATTGCCTCAATAGTCCACATTTTCAGGTAGCAGAACGTGCATTATTCCTATGGAATAACGAGCATATAAGGAATCTAATATTTAAAAACCGCAAGGTGATTCTGCCCCTCATCTTCTCCCCTTTGGAGAAAAACACAAAAGCTCATTGGAACCAAGCCGTTCAAACCCTAACCGTAAATGTCAGGAAAGTATTCTCAGATTTTGATCAATCATTATTCCAAGATTGTCTAGTCAGCTACCAAGAACACGAAACCAAGGTAAAGGAAAGCCTTGCAAAGCGACAGATGACTTGGAACCGCCTTGATGCCTTAGCAGCCTCCAAAACCAAGCCTATAGTCATCTCGATGTTTGACTCACCTGTGACTATGACGACCACCACTGCAGTAAAATAA | 1473 | 36.86 | MIKQFLKKIPKKSASKSSHHNDEKPDSSSNKASISSVKSSEVVQIVNEVSYEALPSFRDVSSSEKHSLFIKKMSMCCVVFDFNDPLKSLKEKDVKKQTLLELVEYVSSVSSKFNEVTILEITKMVSANLFRSLPNLSNESKLPDIYDQEDDEFVMDPSWPHLQVVYEFLLRFVASSETDAKIAKKYIDQSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYHFILESGKHNGIAEILELLGSIINGFTMPLKEEHKVFLVHVLIPLHKPRYLSMYQQQLVYCISQFVEKDCKLADTVIRGLLKYWPVTNSAKEVMYLSELEEILEVTKAAEFEKCMVPLFRQIGHCLNSPHFQVAERALFLWNNEHIRNLIFKNRKVILPLIFSPLEKNTKAHWNQAVQTLTVNVRKVFSDFDQSLFQDCLVSYQEHETKVKESLAKRQMTWNRLDALAASKTKPIVISMFDSPVTMTTTTAVK | 490 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g02418 | 490 | SUPERFAMILY | ARM repeat | 67 | 446 | IPR016024 | - | |
| Cind3g02418 | 490 | Gene3D | - | 62 | 463 | IPR011989 | - | |
| Cind3g02418 | 490 | PANTHER | SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B | 9 | 469 | IPR002554 | GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro) | |
| Cind3g02418 | 490 | FunFam | Serine-threonine protein phosphatase 2A regulatory subunit | 61 | 464 | - | - | |
| Cind3g02418 | 490 | PIRSF | PP2A-B56 | 3 | 488 | IPR002554 | GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro) | |
| Cind3g02418 | 490 | Pfam | Protein phosphatase 2A regulatory B subunit (B56 family) | 54 | 465 | IPR002554 | GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro) | |
| Cind3g02418 | 490 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g02418 | K11584 | serine/threonine-protein phosphatase 2A regulatory subunit B' |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 67291 | Cind1g03057 | Cind3g02418 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:350058666 | Cind7g02395 | Cind-Chr7:80603715 | dispersed | |
| Cind | Cind-Chr3:33749791 | Cind3g02418 | Cind-Chr3:350058666 | transposed | |
| Cind | Cind-Chr1:349641666 | Cind3g02418 | Cind-Chr3:350058666 | wgd |