AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02418 ATGATCAAGCAATTTCTTAAAAAGATTCCCAAGAAATCAGCCTCAAAATCATCACACCATAATGATGAAAAACCTGATTCTAGCTCGAATAAGGCGAGTATTTCGAGTGTTAAGTCTAGTGAAGTGGTGCAGATAGTTAATGAAGTTTCTTATGAAGCTTTGCCTAGTTTTCGAGACGTATCAAGTTCCGAAAAACATAGTTTGTTTATCAAGAAAATGAGTATGTGTTGTGTAGTGTTTGATTTTAACGACCCGTTAAAGAGTTTGAAAGAAAAAGATGTAAAGAAACAAACTTTACTTGAACTAGTTGAATATGTTTCTTCAGTAAGTTCCAAGTTTAATGAGGTTACAATTTTGGAGATAACGAAAATGGTGTCTGCTAATTTGTTTCGGTCATTACCTAACTTAAGTAATGAAAGTAAGTTGCCGGATATATATGATCAAGAAGATGACGAGTTTGTTATGGATCCTTCATGGCCACATCTTCAAGTTGTGTATGAGTTTTTGCTTAGGTTTGTGGCCTCATCAGAGACTGATGCCAAAATTGCGAAAAAGTATATAGATCAGTCGTTCGTATTAAAATTGCTTGATCTTTTTGATTCTGAGGATCAAAGGGAAAGGGAGTATTTAAAGACGATTATGCATAGGATTTATGGCAAGTTTATGGTGCATCGGCCGTTTATTAGAAAAGCGATTAATAATATATTTTATCATTTTATTCTTGAGTCTGGTAAGCATAACGGGATAGCGGAAATACTTGAGCTTTTAGGTAGTATAATCAATGGATTTACGATGCCATTGAAGGAAGAACATAAGGTGTTTCTTGTTCATGTGTTGATTCCACTTCATAAGCCGAGGTATTTGTCTATGTATCAGCAGCAACTTGTGTATTGTATTAGTCAGTTTGTTGAAAAAGATTGTAAGCTAGCTGATACGGTGATTAGGGGGCTGTTAAAGTATTGGCCTGTGACTAATAGTGCTAAAGAAGTGATGTATCTTAGTGAATTGGAGGAAATTCTTGAAGTTACAAAGGCTGCAGAATTTGAAAAGTGTATGGTTCCTTTGTTTCGTCAGATTGGTCATTGCCTCAATAGTCCACATTTTCAGGTAGCAGAACGTGCATTATTCCTATGGAATAACGAGCATATAAGGAATCTAATATTTAAAAACCGCAAGGTGATTCTGCCCCTCATCTTCTCCCCTTTGGAGAAAAACACAAAAGCTCATTGGAACCAAGCCGTTCAAACCCTAACCGTAAATGTCAGGAAAGTATTCTCAGATTTTGATCAATCATTATTCCAAGATTGTCTAGTCAGCTACCAAGAACACGAAACCAAGGTAAAGGAAAGCCTTGCAAAGCGACAGATGACTTGGAACCGCCTTGATGCCTTAGCAGCCTCCAAAACCAAGCCTATAGTCATCTCGATGTTTGACTCACCTGTGACTATGACGACCACCACTGCAGTAAAATAA 1473 36.86 MIKQFLKKIPKKSASKSSHHNDEKPDSSSNKASISSVKSSEVVQIVNEVSYEALPSFRDVSSSEKHSLFIKKMSMCCVVFDFNDPLKSLKEKDVKKQTLLELVEYVSSVSSKFNEVTILEITKMVSANLFRSLPNLSNESKLPDIYDQEDDEFVMDPSWPHLQVVYEFLLRFVASSETDAKIAKKYIDQSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYHFILESGKHNGIAEILELLGSIINGFTMPLKEEHKVFLVHVLIPLHKPRYLSMYQQQLVYCISQFVEKDCKLADTVIRGLLKYWPVTNSAKEVMYLSELEEILEVTKAAEFEKCMVPLFRQIGHCLNSPHFQVAERALFLWNNEHIRNLIFKNRKVILPLIFSPLEKNTKAHWNQAVQTLTVNVRKVFSDFDQSLFQDCLVSYQEHETKVKESLAKRQMTWNRLDALAASKTKPIVISMFDSPVTMTTTTAVK 490
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02418 490 SUPERFAMILY ARM repeat 67 446 IPR016024 -
Cind3g02418 490 Gene3D - 62 463 IPR011989 -
Cind3g02418 490 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 9 469 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cind3g02418 490 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 61 464 - -
Cind3g02418 490 PIRSF PP2A-B56 3 488 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cind3g02418 490 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 54 465 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cind3g02418 490 MobiDBLite consensus disorder prediction 1 35 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02418 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Event-related genes

Select Gene_1 Gene_2 Event_name
67291 Cind1g03057 Cind3g02418
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:350058666 Cind7g02395 Cind-Chr7:80603715 dispersed
Cind Cind-Chr3:33749791 Cind3g02418 Cind-Chr3:350058666 transposed
Cind Cind-Chr1:349641666 Cind3g02418 Cind-Chr3:350058666 wgd