AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02563 ATGTTTCCTCTCAAAACCCCATCAAAACCCCACCCCATAAAATCCCAAAAAAACTCAGGGTTTTTATCAGCAATTGGTAATGCAATTGAAGAGCAAGAGTATAGGAAAGCTAGAGCTGAAGTTGTAAGGAAAGGGACAGGTTTAGATGGTTATAATATTGAAGGGATTTCAATTGGTGGTCATGAGACTTGTGTTATTATTCCTGAATTGAAATGTGCTTTCGATATTGGCCGGTGTCCTGCGCGAGCTGTGGCCATGAATTTCTTGTTTATTACTCATGGGCATCTTGATCATATTGGTGGGCTACCCATGTATATTGCTACACGTGGTTTATACAGCATGACTCCACCCACTGTATTTGTACCTCCTTCCATCAAAGATGATGTCGAAAACTTGATTGAGCTTCACAGGAAGATGGGTCAAGTGGAATTGAATGTCGATTTGGTTGCATTGGATATAGGAGAAACATACGAGCTACGAAACGACCTTGTTGTACGGCCATTTAAAACACACCATGTCATACCGAGTCAGGGTTATGTCATTTACTCTGTTCGCAAGAAGCTCAAGAAGCAATATATTCATCTAAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGTGTCGAGATAACGGATATCATATTGTCTCCTGAGGTGGCATTCACCGGAGATACAACTTCTGATTTTCTACTTGATCCAAGAAGCTCTGATGCCTTGAGAGCAAAAGTTCTTATAACTGAGGCTACCTTTTTGGACGATAAATGTGACATTGAGCATGCACGAGAACATGGTCACATGCATATTGACGAGATTATAGAGAATGCTAAGTGGATCCGTAACAATGCCATTCTTTTGACCCATTTCTCCTCCCGCTACCATATCGAGTAA 888 40.88 MFPLKTPSKPHPIKSQKNSGFLSAIGNAIEEQEYRKARAEVVRKGTGLDGYNIEGISIGGHETCVIIPELKCAFDIGRCPARAVAMNFLFITHGHLDHIGGLPMYIATRGLYSMTPPTVFVPPSIKDDVENLIELHRKMGQVELNVDLVALDIGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYIHLKGREIEKKKKSGVEITDIILSPEVAFTGDTTSDFLLDPRSSDALRAKVLITEATFLDDKCDIEHAREHGHMHIDEIIENAKWIRNNAILLTHFSSRYHIE 295
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02563 295 PANTHER TRNASE Z TRZ1 12 295 - -
Cind3g02563 295 Pfam Beta-lactamase superfamily domain 85 288 IPR001279 -
Cind3g02563 295 Gene3D - 51 295 IPR036866 -
Cind3g02563 295 SUPERFAMILY Metallo-hydrolase-oxidoreductase 85 292 IPR036866 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02563 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:346898877 Cind4g04990 Cind-Chr4:289154093 dispersed