AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g02565 | ATGCGAAACAATGCAGTTGAAAGAAAGAGATGGACTTCTGTGAGATCATATCTTTGTGGTGATGAATTTAATTCTGTTTTAGCCGAAGAAGATTGCGCTTCTAGAAGAAGTGATAAAACAGCCCTGAGTTCGGTTTTTCTTGCTGATTATTCTGGTTCTGCTAGAACATCAAAAGCTACTATTTTTAGCTCAAGAATTGAAGATGACTCATCATCTATCAAGGGTTCAGAAGCAAGTGTCACACAGCATCTAGAACACGAGGAAAATACTACTTTGAACTTGGAACACAAGGCTGCAGTTGTCATTCAGACAGCATTTAGAAGTTCTATGGCAAGGCGTCGAATTGAAATACCTGAACCTGTGGATATTGGTGATCATGATCAAGAGTCGATAGCAACATCAATAGAAGTGCAAACTGGAAACTCGGTGGTGGAAGCTAAAGAGGTTAGCGAAAGTTTCACTCATCGTGTGCAGCAGCATCACAAGGGTACTAGAGCACAAACATTAAGGCTAAAGGAGGATTGGGACGATAGCACCCTGAGTAGCAACATATCGAAAATGAGGATGCAACATAGACTAGAGGCATCTACTAGACGTGAAAGAGCACTCGCCTATGCTTTTTCTCAACAGTTGAGGATATGCTCAAAGAAGAAACAAAATGTGAGATCCGGGAACGATTCAGAAGCAAACATGAGCTGGAGCTGGCTTGAGAGATGGATGGCTACCCGGCAACACGACACTTCATTTGGGGACATAAGCAAACAGTTTGAACAATTAAATGTGAATGAAAAACTAATGGTACAAACTAGAGTTTTATCAGATTTAGCAGGGGAGGAGAAGGAAAGTTGTGGATCAAATGAAGTTTCTATGCGTTTTGATAACGTTTCTTTGAGCTCAAAAACAGGCGAAAAATCTTACTTTAAACCCACTCGAAATAGACTTAAGGCTACAAGTGTCTCGAGGCGAAAAACATCACCAGCTTATGGTTTCAGTAAGGACTATTCTAAGCAATTTGGTGATTGTGATGAGGGGGCTCTTAAGAGGGTTGCTGATGCTTCATACTCTTGGCAGGAGGTTATTATGGGAAAGGCTAAAAAGGAAGCGGTATCGGTTGTGGGGAGGTGGAAAGATTGTGATATTCTGAAAAGGTTGGAGTGGACATATAATTATGAAAGGGAGAGGAAATTATATGGTTCATTTTCCGAGGATGATGATTCGGATGTTAGTAATTTTGTTAATAGGGAAGATGATGGTAATAAAATGGATGGAAGTCGTGCTTGGTGGAAACTTGAGTCGATTCGACGCAAACATCAGCATAACAACATACTGTTGTAA | 1335 | 40.6 | MRNNAVERKRWTSVRSYLCGDEFNSVLAEEDCASRRSDKTALSSVFLADYSGSARTSKATIFSSRIEDDSSSIKGSEASVTQHLEHEENTTLNLEHKAAVVIQTAFRSSMARRRIEIPEPVDIGDHDQESIATSIEVQTGNSVVEAKEVSESFTHRVQQHHKGTRAQTLRLKEDWDDSTLSSNISKMRMQHRLEASTRRERALAYAFSQQLRICSKKKQNVRSGNDSEANMSWSWLERWMATRQHDTSFGDISKQFEQLNVNEKLMVQTRVLSDLAGEEKESCGSNEVSMRFDNVSLSSKTGEKSYFKPTRNRLKATSVSRRKTSPAYGFSKDYSKQFGDCDEGALKRVADASYSWQEVIMGKAKKEAVSVVGRWKDCDILKRLEWTYNYERERKLYGSFSEDDDSDVSNFVNREDDGNKMDGSRAWWKLESIRRKHQHNNILL | 444 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g02565 | 444 | ProSiteProfiles | IQ motif profile. | 95 | 122 | - | - | |
| Cind3g02565 | 444 | PANTHER | IQ-DOMAIN 5-RELATED | 156 | 310 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g02565 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:346746377 | Cind5g01320 | Cind-Chr5:37722211 | dispersed | |
| Cind | Cind-Chr3:346746377 | Cind1g06212 | Cind-Chr1:306322279 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g02085 | . | 57 | 98 | IQD Protein family | AT2G26180 | 59.524 | 4.58e-10 | 52.4 | |
| Cind1g02144 | . | 1 | 457 | IQD Protein family | AT5G03040 | 46.336 | 3.61e-108 | 324.0 | |
| Cind1g02646 | . | 295 | 571 | IQD Protein family | AT1G19870 | 28.344 | 4.74e-19 | 87.8 | |
| Cind1g04231 | . | 1 | 386 | IQD Protein family | AT2G26180 | 58.753 | 8.95e-139 | 402.0 | |
| Cind1g04274 | . | 149 | 319 | IQD Protein family | AT3G59690 | 56.522 | 5.04e-63 | 212.0 | |
| Cind1g05783 | ACH | 1 | 481 | IQD Protein family | AT4G23060 | 34.8 | 1.14e-57 | 193.0 | |
| Cind1g06212 | . | 1 | 379 | IQD Protein family | AT5G03040 | 41.766 | 5.80e-84 | 265.0 | |
| Cind1g07747 | ACH | 18 | 360 | IQD Protein family | AT5G07240 | 41.71 | 2.27e-39 | 147.0 | |
| Cind2g00088 | . | 1 | 374 | IQD Protein family | AT4G14750 | 33.248 | 9.01e-42 | 149.0 | |
| Cind2g00886 | . | 146 | 243 | IQD Protein family | AT5G03040 | 53.061 | 1.30e-25 | 101.0 | |
| Cind2g02800 | . | 712 | 794 | IQD Protein family | AT1G19870 | 47.727 | 2.67e-16 | 70.1 | |
| Cind2g02801 | . | 456 | 539 | IQD Protein family | AT1G19870 | 41.176 | 1.28e-06 | 47.0 | |
| Cind2g02802 | . | 285 | 365 | IQD Protein family | AT1G19870 | 34.568 | 5.77e-11 | 60.1 | |
| Cind2g04722 | . | 1 | 794 | IQD Protein family | AT1G19870 | 34.699 | 1.43e-101 | 329.0 | |
| Cind2g05973 | . | 108 | 576 | IQD Protein family | AT1G74690 | 40.404 | 2.11e-78 | 256.0 | |
| Cind3g00152 | . | 11 | 534 | IQD Protein family | AT4G00820 | 52.305 | 7.22e-153 | 446.0 | |
| Cind3g00181 | . | 47 | 534 | IQD Protein family | AT4G00820 | 53.557 | 2.84e-147 | 430.0 | |
| Cind3g00928 | . | 1 | 353 | IQD Protein family | AT3G16490 | 49.046 | 6.87e-68 | 217.0 | |
| Cind3g02565 | . | 27 | 392 | IQD Protein family | AT5G35670 | 41.818 | 4.72e-64 | 211.0 | |
| Cind3g03007 | . | 1 | 375 | IQD Protein family | AT5G03960 | 28.191 | 1.19e-17 | 80.9 | |
| Cind3g04066 | ACH | 48 | 240 | IQD Protein family | AT3G15050 | 51.295 | 6.21e-68 | 209.0 | |
| Cind3g05446 | . | 1 | 374 | IQD Protein family | AT4G14750 | 48.744 | 8.58e-90 | 274.0 | |
| Cind4g00571 | . | 295 | 361 | IQD Protein family | AT1G19870 | 55.224 | 2.97e-18 | 79.7 | |
| Cind4g00598 | . | 281 | 345 | IQD Protein family | AT2G26410 | 40.0 | 9.35e-08 | 48.1 | |
| Cind4g00599 | . | 55 | 224 | IQD Protein family | AT3G09710 | 39.412 | 5.99e-27 | 104.0 | |
| Cind4g00603 | . | 55 | 275 | IQD Protein family | AT3G09710 | 41.176 | 1.08e-48 | 166.0 | |
| Cind4g01059 | . | 1 | 96 | IQD Protein family | AT5G03040 | 38.318 | 4.94e-06 | 43.9 | |
| Cind4g03845 | . | 108 | 576 | IQD Protein family | AT1G74690 | 38.538 | 4.86e-70 | 232.0 | |
| Cind4g04993 | . | 1 | 571 | IQD Protein family | AT1G18840 | 35.495 | 1.61e-76 | 250.0 | |
| Cind4g04127 | . | 1 | 402 | IQD Protein family | AT1G72670 | 43.448 | 1.02e-81 | 263.0 | |
| Cind4g04318 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 51.538 | 3.65e-89 | 272.0 | |
| Cind4g05052 | . | 1 | 100 | IQD Protein family | AT3G51380 | 51.493 | 7.52e-30 | 102.0 | |
| Cind4g05298 | . | 285 | 381 | IQD Protein family | AT1G19870 | 32.653 | 1.45e-08 | 49.7 | |
| Cind4g05306 | . | 229 | 317 | IQD Protein family | AT1G19870 | 38.0 | 1.44e-06 | 47.0 | |
| Cind5g02895 | ACH | 1 | 482 | IQD Protein family | AT4G23060 | 35.685 | 5.53e-60 | 201.0 | |
| Cind5g01795 | . | 1 | 517 | IQD Protein family | AT3G59690 | 49.12 | 6.85e-149 | 435.0 | |
| Cind5g01797 | . | 406 | 451 | IQD Protein family | AT2G43680 | 54.348 | 5.94e-12 | 62.8 | |
| Cind5g01798 | . | 397 | 516 | IQD Protein family | AT3G59690 | 53.175 | 1.33e-32 | 118.0 | |
| Cind5g01808 | . | 397 | 516 | IQD Protein family | AT3G59690 | 53.175 | 9.63e-33 | 118.0 | |
| Cind5g03670 | . | 1 | 444 | IQD Protein family | AT3G49260 | 43.421 | 5.58e-73 | 234.0 | |
| Cind5g04102 | . | 1 | 450 | IQD Protein family | AT5G03040 | 50.0 | 1.18e-127 | 374.0 | |
| Cind5g04304 | . | 1 | 392 | IQD Protein family | AT3G22190 | 56.716 | 1.20e-120 | 355.0 | |
| Cind6g01608 | . | 21 | 443 | IQD Protein family | AT5G13460 | 44.522 | 2.31e-95 | 290.0 | |
| Cind6g02477 | . | 308 | 361 | IQD Protein family | AT1G19870 | 61.111 | 2.33e-15 | 74.3 | |
| Cind7g02236 | . | 98 | 194 | IQD Protein family | AT2G26180 | 75.258 | 1.07e-33 | 118.0 | |
| Cind7g02245 | . | 1 | 450 | IQD Protein family | AT5G03040 | 53.617 | 4.19e-145 | 421.0 | |
| Cind7g03052 | . | 1 | 450 | IQD Protein family | AT5G03040 | 47.346 | 2.41e-118 | 352.0 | |
| Cind7g03629 | . | 175 | 534 | IQD Protein family | AT4G00820 | 34.865 | 5.11e-35 | 131.0 | |
| Cind7g04275 | . | 201 | 788 | IQD Protein family | AT1G19870 | 36.17 | 4.07e-74 | 263.0 | |
| Cind7g04480 | . | 102 | 575 | IQD Protein family | AT1G74690 | 42.116 | 8.46e-82 | 265.0 | |
| Cind7g05052 | . | 108 | 343 | IQD Protein family | AT5G07240 | 43.462 | 5.98e-45 | 156.0 | |
| Cind8g00211 | ACH | 61 | 237 | IQD Protein family | AT3G15050 | 51.977 | 9.50e-63 | 194.0 | |
| Cind8g01091 | ACH | 42 | 353 | IQD Protein family | AT3G16490 | 56.091 | 4.99e-91 | 277.0 | |
| Cind8g03562 | . | 712 | 794 | IQD Protein family | AT1G19870 | 53.409 | 2.11e-19 | 79.0 | |
| Cind8g03848 | . | 1 | 229 | IQD Protein family | AT4G14750 | 44.939 | 6.31e-46 | 155.0 | |
| Cind9g02275 | . | 11 | 534 | IQD Protein family | AT4G00820 | 42.707 | 6.26e-118 | 356.0 | |
| Cind9g02968 | ACH | 108 | 554 | IQD Protein family | AT1G74690 | 45.175 | 6.12e-89 | 283.0 | |
| Cind9g03966 | . | 1 | 481 | IQD Protein family | AT4G23060 | 34.757 | 2.95e-59 | 199.0 |