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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02580 ATGTCGTTGACCGTTGAAGCTGTTTCTGGTTGCTCCAAGGACATGGGGTTCGAGGAAAACAAGGAACAAGGCAAAGAAAGTATTAAAAGAAGTGGGAGTGAATCTTCATTTTGTGAAAGTGAAAATGAAGGAGATGAAGTTGAAGATATTAAAGTAGAATTGGGTCCTCAATGCACCCTTAAAGATCAACTTGAGAAGGATAAGGATGATGAGAGTCTGAGAAAGTGGAAAGAACAACTACTTGGGAATGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTGAAGATCCTGAGTCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCACAGATGGAAAACCTAAAGGCTCATGGTTTACACTGAAAGAAGGTTCTCGTTACAGCCTCAGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCCGGTTTAAAGTACACCAACAATGTATGGAAAACTGGTGTGAAGGTGGATAACGCGAAACAGATGCTTGGTACTTTTAGTCCACAGCAAGAAGCATACACATATGATATGCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGGTCTTACTCTGCTAAAACTAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATTAGCTATACCTTTGATATCCGAAAAGATTGGGCGAGTGGTGAATAG 696 39.94 MSLTVEAVSGCSKDMGFEENKEQGKESIKRSGSESSFCESENEGDEVEDIKVELGPQCTLKDQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPTDGKPKGSWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNAKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEISYTFDIRKDWASGE 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02580 231 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 227 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Cind3g02580 231 Pfam RHO protein GDP dissociation inhibitor 41 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cind3g02580 231 SUPERFAMILY E set domains 41 227 IPR014756 -
Cind3g02580 231 MobiDBLite consensus disorder prediction 15 29 - -
Cind3g02580 231 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 229 IPR024792 -
Cind3g02580 231 MobiDBLite consensus disorder prediction 1 50 - -
Cind3g02580 231 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cind3g02580 231 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cind3g02580 231 PRINTS RHO protein GDP dissociation inhibitor signature 206 223 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cind3g02580 231 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cind3g02580 231 FunFam Rho GDP-dissociation inhibitor 1 50 229 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02580 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
67368 Cind1g04020 Cind3g02580
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:377610531 Cind3g02580 Cind-Chr3:345172168 dispersed
Cind Cind-Chr2:345797154 Cind3g02580 Cind-Chr3:345172168 dispersed
Cind Cind-Chr3:295097353 Cind3g02580 Cind-Chr3:345172168 dispersed
Cind Cind-Chr3:345172168 Cind6g03445 Cind-Chr6:172412976 dispersed
Cind Cind-Chr3:83609094 Cind3g02580 Cind-Chr3:345172168 transposed
Cind Cind-Chr4:100221395 Cind3g02580 Cind-Chr3:345172168 transposed
Cind Cind-Chr1:352244295 Cind3g02580 Cind-Chr3:345172168 wgd