AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02585 ATGGCATTTCGTCACACTGGGTCCACCACAAACCAATGGGTTGCATGGGCCTTAAATATTGGCGGGTCAGGTATGCTTGGTGCACAAGCCCTTGTAGCAGTAACAAGCTCAAACGGGTCAGTTGATGCTTATACTAGTGCTGTAACAAGTTTTGGTACTACTTTACAAAGGAGCACTTTAAGCTTTGAAGTGCCAGTGATTAGAGCTGAGAGAATTAATGGAGATGTGGTTATTTATGCAACGTTGGTTTTGCCAAGTGGAGGGACGAGATTTAATCAAGTGTGGCAAGTGGGTCCGGTTAATAATGGAGCTCCGGGTATACATGGGTTGGGTAATGATAATAGGAACTCGGTTGGGTCGGTTGACTTTAGTACTGGTCAAACTGGTGGTGGTGGTAGTGTTGGTGGATCACGGATGCGAAGGAGGAATACTCATGGAGTATTAAACGCTGTTAGTTGGGGAGTATTGATGCCTATGGGAGCAATGACAGCAAGATATTTAAAGGTGTTTAAAGTAGCTAATCCAGCCTGGTTCTATATCCATGCTGCTTGCCAAACATCAGCCTATGGCGTAGGTGTAGCGGGATGGGCCACTGGACTAAAGCTAGGCAGTGACTCAGCCGGAATCACTCACACGAGTCATCGCAACATTGGAATCATCCTCTTTTCACTTGGAACACTTCAGGTTTTCGCTTTGCTGTTGAGGCCTAAGCCAGACAACAAGTACAGATTTTATTGGAACATATACCACCATGGCCTTGGATACTCGGTGATCATCTTGAGCATTATCAACGTCTACGAGGGACTTGATATCTTGGACCCTGAGAAGAAGTGGAAGCACGCCTACACCGGCATACTTATATCTTTGGGGGCTATCACGGTTCTGTTAGAAGCTTTGACATGGTTCATCGTTTTGAAGAGGAAGAAGGAAGACAAAAGGACACATGCAGGGACTAATGGTTCATATGGAGCCAATGGATCTGCGTAG 987 45.8 MAFRHTGSTTNQWVAWALNIGGSGMLGAQALVAVTSSNGSVDAYTSAVTSFGTTLQRSTLSFEVPVIRAERINGDVVIYATLVLPSGGTRFNQVWQVGPVNNGAPGIHGLGNDNRNSVGSVDFSTGQTGGGGSVGGSRMRRRNTHGVLNAVSWGVLMPMGAMTARYLKVFKVANPAWFYIHAACQTSAYGVGVAGWATGLKLGSDSAGITHTSHRNIGIILFSLGTLQVFALLLRPKPDNKYRFYWNIYHHGLGYSVIILSIINVYEGLDILDPEKKWKHAYTGILISLGAITVLLEALTWFIVLKRKKEDKRTHAGTNGSYGANGSA 328
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02585 328 SMART 561-7 144 269 IPR006593 -
Cind3g02585 328 Pfam Protein of unknown function (DUF568) 25 123 IPR045265 -
Cind3g02585 328 FunFam Cytochrome b561 and DOMON domain-containing protein 123 313 - -
Cind3g02585 328 Gene3D - 123 315 - -
Cind3g02585 328 CDD Cyt-b561-FRRS1-like 120 298 - -
Cind3g02585 328 PIRSF UCP037471 1 327 IPR017214 -
Cind3g02585 328 Pfam Eukaryotic cytochrome b561 145 269 IPR006593 -
Cind3g02585 328 ProSiteProfiles Cytochrome b561 domain profile. 104 305 IPR006593 -
Cind3g02585 328 ProSiteProfiles DOMON domain profile. 1 98 IPR005018 -
Cind3g02585 328 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 2 309 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02585 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
67366 Cind1g04007 Cind3g02585
67367 Cind1g04010 Cind3g02585
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:4413412 Cind3g02585 Cind-Chr3:344937492 dispersed
Cind Cind-Chr1:352533176 Cind3g02585 Cind-Chr3:344937492 dispersed
Cind Cind-Chr2:240299334 Cind3g02585 Cind-Chr3:344937492 dispersed
Cind Cind-Chr3:354789821 Cind3g02585 Cind-Chr3:344937492 dispersed
Cind Cind-Chr3:344937492 Cind8g02132 Cind-Chr8:247845234 dispersed
Cind Cind-Chr8:51166098 Cind3g02585 Cind-Chr3:344937492 transposed
Cind Cind-Chr8:118371941 Cind3g02585 Cind-Chr3:344937492 transposed
Cind Cind-Chr1:352386305 Cind3g02585 Cind-Chr3:344937492 wgd