AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02586 ATGGGCATAGCCAAGATTGCATACCGAGCAGAACAAGGGTCTCGTGGTTGGGTGGCTTGGGCCATTAACCCAAACCAAATAGGTATGGTTGGGTCAGAGGCAATTGTGGCGTTCCATAACAGTAATGGAGGTATAACGGTTTATCCAACATTGATAACAAGTTACAGCCCGTCAATGCTTCCTGGAGATCTTAGCTTTCAGGTTTCGGGTCTTTCAGCTGACTTTGTGAATGGTGAGATAACTATATATGCGACTGTGGGCCCATTTGCAGGCGGATCCCTTGTGAATCAAGTATGGCAAGCTGGGAATTTGGTTTTGAATGATGTACCGCAAATGCACGATGTTTCTCAACAGAATCTAGAATCAACAGGGGAACTTGATTTCTTGTCTAGTTAG 396 44.95 MGIAKIAYRAEQGSRGWVAWAINPNQIGMVGSEAIVAFHNSNGGITVYPTLITSYSPSMLPGDLSFQVSGLSADFVNGEITIYATVGPFAGGSLVNQVWQAGNLVLNDVPQMHDVSQQNLESTGELDFLSS 131
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02586 131 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 4 130 - -
Cind3g02586 131 ProSiteProfiles DOMON domain profile. 1 102 IPR005018 -
Cind3g02586 131 Pfam Protein of unknown function (DUF568) 29 128 IPR045265 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02586 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:251259205 Cind3g02586 Cind-Chr3:344879341 dispersed
Cind Cind-Chr3:344879341 Cind6g04021 Cind-Chr6:173531199 dispersed
Cind Cind-Chr3:344870718 Cind3g02586 Cind-Chr3:344879341 proximal