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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02587 ATGGGGGGAAATGATAACCATTTTGAATCCAAAAGAACTGTTTTTGTGACTGTGGGCACAACGTCTTTCGATTCTCTTGTTAAAGCTGTTGACACTGAGCAAGTTCAAGAAGCGTTGTTGAAGAAAGGATACACGCATCTTGTAATTCAAATGGGTCGTGGATCTTACATCCCGAAAAAGTCTAGTGGTGAAGATGGATCGCTGGTTGTAGATTACTTTACGTTTTCCCCAAGCATTGCAGACTATATGAAATCAGCATCTCTTGTCATAAGTCACGCAGGTTCAGGGAGCATATTTGAGACACTAAAACTGGCCAAACCTTTAATAGTCGTCGTTAATGAAGACTTGATGGATAACCATCAGAGTGAGCTTGCTGAAGAACTAGCAGAAAGGAAGCATTTGTTTTGTGCTCGCCCTCAAACGCTCTACCAAGTTATTGAATCTCTGGATTTAGATTCTATTGTACCATATCAGTCAGGTGACGCTACTCCGGTTGCTAAACTAATCAATAGACATCTTGGTTTTCCTGCTGATTGA 537 40.97 MGGNDNHFESKRTVFVTVGTTSFDSLVKAVDTEQVQEALLKKGYTHLVIQMGRGSYIPKKSSGEDGSLVVDYFTFSPSIADYMKSASLVISHAGSGSIFETLKLAKPLIVVVNEDLMDNHQSELAEELAERKHLFCARPQTLYQVIESLDLDSIVPYQSGDATPVAKLINRHLGFPAD 178
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02587 178 Pfam Glycosyltransferase family 28 C-terminal domain 13 165 IPR007235 GO:0016758(InterPro)
Cind3g02587 178 Gene3D Glycogen Phosphorylase B; 8 173 - -
Cind3g02587 178 PANTHER UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13 9 177 IPR052474 GO:0006488(PANTHER)|GO:0043541(PANTHER)
Cind3g02587 178 FunFam UDP-N-acetylglucosamine transferase subunit alg13 8 173 - -
Cind3g02587 178 SUPERFAMILY UDP-Glycosyltransferase-glycogen phosphorylase 42 149 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02587 K07432 beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:344877361 Cind4g04066 Cind-Chr4:338293021 dispersed
Cind Cind-Chr3:344868632 Cind3g02587 Cind-Chr3:344877361 proximal