AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02592 ATGTCTCTGACAAATACACAAACTCAAACTGATCTTGATCTGATGACTATGAAGCAGAAGCCAGTTCGTAGTTCAGGTGAGATTCATGTGATTGTGGGACCCATGTTTGCTGGCAAAACAACTGCTCTTCTTCGTAGGATTAAATCTGAAGCAACTAATGGAAGGAATATAGCAATGATAAAGTCGAGTAAGGATAATCGATACGCGATAGATTCAGTTGTGACGCATGATGGAACAAAATATCCTTGTTGGGCACTTCCTGATTTGTTGTCTTTTAAACAAAGACTTGGGGAAGAAGCTTATGAAAAGCTGGATGTTATTGGGATTGATGAGGCACAATTCTTTGATGATCTCTATGACTTCTGTTCTAAAGCTGCTGATCATGATGGTAAAACTGTCATAATTGCTGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCGGTTCTTGATATAGTACCACTTGCTGATACCATAACCAAGTTGACTGCTCGATGTGAATTATGTGGTAAACGAGCTCATTTCACTTTTAGGAAGACCAGCGAGACAAAAACAGAACTTATTGGCGGGGCGGATATGTATATGCCTGTCTGTCGTCAACATTATGTTAGCGGACAAACGGTGATAAAAAACACCAGACAAACAACCTCAACTACCAGTGCTTAA 669 39.91 MSLTNTQTQTDLDLMTMKQKPVRSSGEIHVIVGPMFAGKTTALLRRIKSEATNGRNIAMIKSSKDNRYAIDSVVTHDGTKYPCWALPDLLSFKQRLGEEAYEKLDVIGIDEAQFFDDLYDFCSKAADHDGKTVIIAGLDGDYLRRNFGPVLDIVPLADTITKLTARCELCGKRAHFTFRKTSETKTELIGGADMYMPVCRQHYVSGQTVIKNTRQTTSTTSA 222
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02592 222 PANTHER THYMIDINE KINASE 18 217 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Cind3g02592 222 ProSitePatterns Thymidine kinase cellular-type signature. 190 203 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Cind3g02592 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 206 - -
Cind3g02592 222 Gene3D - 164 205 - -
Cind3g02592 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 164 IPR027417 -
Cind3g02592 222 FunFam Thymidine kinase 22 163 - -
Cind3g02592 222 Pfam Thymidine kinase 26 203 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Cind3g02592 222 PIRSF Tdk 23 218 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Cind3g02592 222 Gene3D - 19 163 IPR027417 -
Cind3g02592 222 FunFam Thymidine kinase 164 206 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02592 K00857 thymidine kinase [EC:2.7.1.21]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:344797841 Cind5g02525 Cind-Chr5:150564871 dispersed