AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g02600 | ATTTCAAGAAAATCATATTTTTGCAACATTAAAGCTTATAAAAAAAACCCATTACATATTAGTACCCAGATTGAAGAACCCATCAAGGGTTTTTCAAAAAGATATGATCTTGATAAGATTAAAGGGGTGATTAGGTGTCAAAATGTTATGGCAATGGAGGGTGGGAGTGGTGTAGGAGGTATGGTTAATGTGAAGGGGTTTTGGAATGGGCCTAAGTTTTCGCAGGTTTTACGGGTTTTTCGAGAGCAAGGTTTGATTTTGGCTGGGCTTTTGGGGTTGTCTGCTTTCTTCTCTATGGCTGAGACTTCGATTACTACTCTTTCGCCTTGGAAGGTTAGAGAGCTGGCTGAAAAAGAAGGAGAAAATGGCGTATTTAAGCTGCTTCGTACAGATGTTACTCGCTTCCTCACCACCATTCTCATTGGCACAACTGTGGTCAACATTGGAGCTACTGCACTTTTCACAGAGGCAGCAACAACAGTTTTTGGCGAAGCTGGTGTCAGTGCAGCAACGGGTGTTATGACGGTTGTTGTTTTACTTTTGACTGAAATTACTCCCAAAAGTATAGCTGTTCACAACGCTACTGCAGTTGCTAGAGCTGTGGTACGTCCCGTTGCATGGCTTTCAATTGTTCTATATCCAGTTGGAAGAGTTGTTACCTTCCTTTCTATGGGAATGCTTAAAATTCTTGGCTTGAAAGGGAAAAGTGAACCATCTGTCACTGAAGATGAACTCAAGTTGATGTTGAGGGTTGCTGAGTTGAGTGGGGCCATTGAGGAAGAAGAACAGGATATGATCGAGAATGTGTTGGAGATAAAAGACACCCACGTGAAGGAGGTTATGACCCCTCTTGTAGATGTGGTCGCAGTTGATGCTAGTGCAACTATACTCGATTTCCATCACTTGTGGGTGACTCATCAATATTCTAGGGTGCCGGTATTTGAGCAGAGAATTGATAACATTGTGGGCATAGCTTATGCAATGGATTTGTTGGATCTTGTCAAGAAAGGAGAGATGCTAGAAACTGCAGCGGTGGGTGAAATCGCTCACAAACCTGCCTATTTTGTTCCTGATTCAATGTTAGTCTGGAATCTTCTGAGGGAGTTTCGCATCAGGAAGGTCCACATGGCGGTAGTTCTTAATGAATATGGGGGAACCGTGGGTATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGATTCAAAGGAAGAAATTGAGCGAAAAACCGGGAATATTGTAAAGCGAGCAGATGGAGTCTTTGATGTTGATGCAAATACATCAATATACCAACTTTCTGAAGATCTAGAAATCATGTTGCCAGAGGATCATCAATACGAGACGGTTTCAGGTTTCATTTGCGAAGCATTTGGATATATACCTAGAACAGGTGAAAGTATTAAAGTAGTACTAAAAAAAGCAAATAAAGAAGATGATGATGATAATGAAGAGAATAAACAAGAAACCAACAGTCAAGATCAGAAAGATATATCTCAAACATTCAAGCTCGGGATTTTGGCGGGAAATTGTAGAAAGGTTAATACTGTTAGATTCGAAAGGATAAACAACAATTCAGCTAAAGAAATTAAAGAAGCTGCTAGGATTGTGCCCAGATTTTGGAAAACGAAATGGAAAAATGACGAAAGTTCAGGCAGCGGCGATGAAGAAAGATTGTATCAGGACCCGCCCAGAATCGCCATCTCCCATGACCATATTTTGGCAGAAAATAACAAACAATGA | 1761 | 40.66 | ISRKSYFCNIKAYKKNPLHISTQIEEPIKGFSKRYDLDKIKGVIRCQNVMAMEGGSGVGGMVNVKGFWNGPKFSQVLRVFREQGLILAGLLGLSAFFSMAETSITTLSPWKVRELAEKEGENGVFKLLRTDVTRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVSAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSIVLYPVGRVVTFLSMGMLKILGLKGKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVDVVAVDASATILDFHHLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDLVKKGEMLETAAVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIERKTGNIVKRADGVFDVDANTSIYQLSEDLEIMLPEDHQYETVSGFICEAFGYIPRTGESIKVVLKKANKEDDDDNEENKQETNSQDQKDISQTFKLGILAGNCRKVNTVRFERINNNSAKEIKEAARIVPRFWKTKWKNDESSGSGDEERLYQDPPRIAISHDHILAENNKQ | 586 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g02600 | 586 | SMART | cbs-1 | 352 | 400 | IPR000644 | - | |
| Cind3g02600 | 586 | SMART | cbs-1 | 286 | 335 | IPR000644 | - | |
| Cind3g02600 | 586 | ProSiteProfiles | CBS domain profile. | 281 | 342 | IPR000644 | - | |
| Cind3g02600 | 586 | Pfam | CBS domain | 345 | 400 | IPR000644 | - | |
| Cind3g02600 | 586 | Pfam | CBS domain | 277 | 334 | IPR000644 | - | |
| Cind3g02600 | 586 | ProSiteProfiles | CNNM transmembrane domain profile. | 76 | 262 | IPR002550 | - | |
| Cind3g02600 | 586 | MobiDBLite | consensus disorder prediction | 552 | 586 | - | - | |
| Cind3g02600 | 586 | FunFam | Magnesium-cobalt efflux protein CorC | 258 | 408 | - | - | |
| Cind3g02600 | 586 | Pfam | Transporter associated domain | 422 | 525 | IPR005170 | - | |
| Cind3g02600 | 586 | SUPERFAMILY | FAD-binding-transporter-associated domain-like | 419 | 482 | IPR036318 | GO:0050660(InterPro) | |
| Cind3g02600 | 586 | MobiDBLite | consensus disorder prediction | 482 | 502 | - | - | |
| Cind3g02600 | 586 | MobiDBLite | consensus disorder prediction | 552 | 571 | - | - | |
| Cind3g02600 | 586 | Gene3D | - | 416 | 510 | IPR016169 | - | |
| Cind3g02600 | 586 | CDD | CBS-pair-CorC-HlyC-assoc | 276 | 397 | IPR044751 | - | |
| Cind3g02600 | 586 | Gene3D | - | 256 | 411 | IPR046342 | - | |
| Cind3g02600 | 586 | ProSiteProfiles | CBS domain profile. | 349 | 406 | IPR000644 | - | |
| Cind3g02600 | 586 | Pfam | Cyclin M transmembrane N-terminal domain | 86 | 262 | IPR002550 | - | |
| Cind3g02600 | 586 | PANTHER | HEMOLYSIN-RELATED | 58 | 552 | - | - | |
| Cind3g02600 | 586 | SMART | CorC-HlyC-2 | 421 | 529 | IPR005170 | - | |
| Cind3g02600 | 586 | SUPERFAMILY | CBS-domain pair | 264 | 403 | IPR046342 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g02600 | K03699 | magnesium and cobalt exporter, CNNM family |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:293822257 | Cind3g02600 | Cind-Chr3:344470726 | dispersed | |
| Cind | Cind-Chr3:293772742 | Cind3g02600 | Cind-Chr3:344470726 | dispersed | |
| Cind | Cind-Chr3:344470726 | Cind8g01206 | Cind-Chr8:280976975 | dispersed |