AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02778 ATGATCCAAAACATTAAAGAGATCACAGGTAATAATTACAGTGAAGATGAGATTCACTCCATGCTTAAAGAATGTTCCATGGATCCAAATCAAACCACTCACAACCTTCTCTCAATGGATCCATTTCATGAAGTTAAAAGGAAGCGTGATCGCAAGAAGGAGAATGTGAATAAAGAATCTACAGAGCCCAGACAGAAACCTGGGATGCAGGGGCGGGGGAATAGAGGTGGTCGAGGGAACTACTCAGCACGTCACATTTCTCATGCAGGTGGTGGCAGGAACTCACTTCCTGCAAAAGAAAATGGAATCATTCAAGGTGTAGAGGATGGTCCAAATCAATCAATGTCTCAGAGTCAGAAGAAAAATGAGTCATTGGTTGCAAGCTCTTCTCGTGAGGGTGTACCTGATGGTTCGTCTGGTAAGAAGCAATCTGAAGCGTCTGCATCTACTGCAAGTAGTAAACTGGAGGGTCCACTGATACAGATCCCGCCTATCGAGGCAAGTAAGGGTCCCATTGTCGCTGTTGTGTTCGGGAGCACACATGGATCTCTTTCCAATAACATATCAGCTTCTGAGACACCACCAGCTTCACCAGGGGTCTTTCTCTCTGATTCAGATCCTATTCTGATGCCCTCACAAGATTCACGAATGCCTGTGGGTACAATCAGACGGGAAGTTTGGAGTCAGAAAACTCCAGTCGAACTAATTCATGAGACCCCACGTGAGATAAAGTCAACTGCTTATGGGTCTGAGGGTGGAAACTTTTCCATGCAAGGGAAGGCATCCGGTGGGCTTCAGGGAGTGGGGAAGAATATAAATTCGGATTCTTCACGACCAGGGTCATCTTCTCGTGTCTCCTTTTCTACTAGCAGGCCTTCTTCAAATCATAATAATAGGACGCAACAAGGGATTGGTCCTCAAAAAGCTGGGCCTAGTATGGAATGGAAACCGAAAGCGGTTAATCCTGTTCTTGCTCAAGGGACTGGGCCAGGTGAGTCAGTTAAGGTACCTGCGGTTCCAGTCGAAGATCACACTTCAACCCTGTCTGCATCCAACTATCTTGGGTCGCAGGATACTACTCATGAATTGGAGAAGAAGTTGGAGGAGTCACACATTTCAGATGTTCAACATGTTATTATCCCAGATCATCTCCATGTTCCAGAAGCCGAGAAACTCGGGTTCTGCTTTGGGAGTTTTGATCCCAGTTTCGGTTTTAATGCAAGCTCGTCAAATGGTCCCGTGAGTGATGTGAGTTCTGAGGCTTCTGAGGTGGTTGATGAAAGTATAGAGGAGCAACCCAGAAATCAAAATGAATTGGCAAGCGCTGATGAAGGATATCAACCTGACCGTCCAACATCCTCTAGTAACATGCCCGAGAGTTTATCAGTTGACGGTGATGTCTCATCAAATGTGACCCCTGAGTACCAAGAGTCCAAGCAAGAACTCCCAACTGCAGGCCATCAGTACCCTGTTCACTCATCACCTAATTTCAGCTTTGGCTTCATGCCACCAGTGATTGGGAACCAGCTTCAATCTTTTGAAAGCAACGAGTCTCAGGGACGTGACGGTTTCCATGTCCCAAGTCTTGTATTCTACCATTCTGGTGCTGATGGTGATGGTCGCATGTCACCCTTCCACTCAACTGGTCCTACCAAGTTCAATGGAAATGTTCCAATGTTATCATCTCAGGAGGTTGGGAACTCCTTAATGCTGTCTGCTGCTGGTCCAACACCCGTAGCTTCACAAACTGGTGCGGTTACACAAGGCTCTATAGCTGTGACTCAGCAACCATTGCCTGTGTTCAGGCAGCCAACCGGGTTCACCTGTCCCATTATCATCCAAATTTTATGCCTTATGAGTGAAGGTCCGGGTGTATGGTATGCCGCACCAGGCCGAGACATGTTCGGTTTACAGGCTAATTCTTTCCATAATCATTCACAAGGTGGTCAAGTTGCATACGGTGCACAAGCTGGACATGGTACATTTGCTGGTATGTATCACCCTGCACAACCAGTAACCACAGGAGCGATTCACCCTCATCTTCAACAGTCTGGAACCAGTGTTGACATGGTGGGACCCGCAGCTAGCGTGTATCAGCAACCACAAAACGCTCAAATGAATTGGCCTAACAACTACTGA 2139 46.89 MIQNIKEITGNNYSEDEIHSMLKECSMDPNQTTHNLLSMDPFHEVKRKRDRKKENVNKESTEPRQKPGMQGRGNRGGRGNYSARHISHAGGGRNSLPAKENGIIQGVEDGPNQSMSQSQKKNESLVASSSREGVPDGSSGKKQSEASASTASSKLEGPLIQIPPIEASKGPIVAVVFGSTHGSLSNNISASETPPASPGVFLSDSDPILMPSQDSRMPVGTIRREVWSQKTPVELIHETPREIKSTAYGSEGGNFSMQGKASGGLQGVGKNINSDSSRPGSSSRVSFSTSRPSSNHNNRTQQGIGPQKAGPSMEWKPKAVNPVLAQGTGPGESVKVPAVPVEDHTSTLSASNYLGSQDTTHELEKKLEESHISDVQHVIIPDHLHVPEAEKLGFCFGSFDPSFGFNASSSNGPVSDVSSEASEVVDESIEEQPRNQNELASADEGYQPDRPTSSSNMPESLSVDGDVSSNVTPEYQESKQELPTAGHQYPVHSSPNFSFGFMPPVIGNQLQSFESNESQGRDGFHVPSLVFYHSGADGDGRMSPFHSTGPTKFNGNVPMLSSQEVGNSLMLSAAGPTPVASQTGAVTQGSIAVTQQPLPVFRQPTGFTCPIIIQILCLMSEGPGVWYAAPGRDMFGLQANSFHNHSQGGQVAYGAQAGHGTFAGMYHPAQPVTTGAIHPHLQQSGTSVDMVGPAASVYQQPQNAQMNWPNNY 712
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02778 712 MobiDBLite consensus disorder prediction 246 315 - -
Cind3g02778 712 MobiDBLite consensus disorder prediction 107 156 - -
Cind3g02778 712 Pfam GBF-interacting protein 1 N-terminal 1 54 IPR009719 -
Cind3g02778 712 SUPERFAMILY UBA-like 1 57 IPR009060 GO:0005515(InterPro)
Cind3g02778 712 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 610 IPR044277 GO:0051082(PANTHER)
Cind3g02778 712 MobiDBLite consensus disorder prediction 409 486 - -
Cind3g02778 712 MobiDBLite consensus disorder prediction 249 307 - -
Cind3g02778 712 MobiDBLite consensus disorder prediction 40 61 - -
Cind3g02778 712 MobiDBLite consensus disorder prediction 434 486 - -
Cind3g02778 712 MobiDBLite consensus disorder prediction 27 156 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02778 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:341515916 Cind3g04528 Cind-Chr3:28038305 dispersed
Cind Cind-Chr2:367995885 Cind3g02778 Cind-Chr3:341515916 transposed
Cind Cind-Chr3:299322210 Cind3g02778 Cind-Chr3:341515916 transposed
Cind Cind-Chr9:157224112 Cind3g02778 Cind-Chr3:341515916 transposed
Cind Cind-Chr1:357159774 Cind3g02778 Cind-Chr3:341515916 wgd