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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03217 ATGGACGCCGAACCTGCCAAAACCTCGTCTCCTGTTAAAGACATGGATGTAGAAGCTTCTGTTCCCGTAGACAACGGACACGATAAAGTTGCACAACAACAAGATGCATCTTCCAAGTTCTCGGTTTCTAGCATAAGCACATGGGCAAAAAGTTTGAAACTTCCTCAACCTCTAGGAGGCACACAAGCCGAGTCTTCGTCATCTGAAAACACTGGAAAATCGTCTTTTTCGCGTCTGACTAGTGGGCTTGGGTTGAAGTTATCTCCAAAGGCTCCCCAAGAAGTTGATAGTCCCGGCGAATCTCCAAAAACGCCACAAGGTGGCTTCATTGGGACCATCACTAAAGGTTTTGTTGACACTTCTAAAAATGCAGTGAAGGCTGTGCAAGTAAAGGCTCGTCATGTTGTATCACAAAACAAACGAAGATATCAGGAAGGAGGATTTGATTTAGATATGACGTACATCACTGAGAATATAATTGCAATGGGATTCCCTGCTGGTGATATGAGCTCAGGTTTCTTTGGATACGTCGAGGGATTTTACCGTAATCAAATGGAGGAAGTAATCAAGTTCTTTGAAACCAATCACAAGGACAAGTACAAGGTTTACAATCTATGCTCAGAGAGGCTATATGATGCATCACTGTTTGAAGGAAAGGTTGCTTGTTTCCCCTTTGATGATCACAATTGTCCTCCGATTCAACTGATCATATCATTTTGCCATAGTGCCTACTCATGGTTGAAAGAGGACATAGAGAATGTTGTGGTTGTTCACTGTAAGGCCGGAATGGCAAGGACGGGCTTAATGATCACAAGTCTGCTTTTATTTCTAAAGTTTTTCCCTACAGCTGAGGAATCCATAGACTATTACAACCAAAAAAGATGTGTTGACGGGAAGGGACTTGTTCTCCCAAGTCAAATTAGATACGTCAAGTATTTTGAACGTGTTCTAACATACTTCAATGGTGAAGATCAACCTGGGCGCAGGTGTATGCTTAGAGGAATTCGCCTTCATAGGTGTCCTTATTGGATCAGACCATCTATTACCGTCTCAGATCATAATGGTGTTCTTTTCTCTACCAAAAAGCATCCCAGAACCAAGGACCTTTCTCCTGAAGATTTTTGGTTTGCTGCACCTAGAAAGGGTATAATGGTCTTTGCTCTTCCTGGGGAGCCTGGTCTGACAGAATTATCTGGAGATTTTAAGATTCAGTTTCATGACCGACAAGGAGACTTCTACTGTTGGCTGAACACAACAATGATGGAGAACAGGACAATCCTTACAACCAATGATCTTGACGGGTTTGACAAGAGGAAACTACCATCCCCAGGTTTTCAAGTAGAGGTTGTAGTTGTGGACTACGACCCCACAGCTCAACCTAAACCACAAACTGAGACTACAGCTAAACCAGCTGAGAGCACAACCACGACTCCCGCCCCACCTCCCCCCTCTGATACCACCTCTCCCTTACCGAAAGATTCTGCAACTAGTGAAAAAGATGATGAGGTGTTCTCTGATAACGAGTCAACCGGAACCAATACTAATTCTAGCAAAATCGAAAATTTATCTGATAAAACCAAGAATATCTCTATATCAAATCCAGGATCCAAGCAGATCGACACCACCAATGAGCCCAAACAGAGCGGCTCAAACCCTATTGGTGAGGTAAGTGATTTTAAGGCAATGGCTGCAGATGCATCTGTGTTCACTTTTGGAGATGACGAAGACTATGAAAGTGACTGA 1743 43.26 MDAEPAKTSSPVKDMDVEASVPVDNGHDKVAQQQDASSKFSVSSISTWAKSLKLPQPLGGTQAESSSSENTGKSSFSRLTSGLGLKLSPKAPQEVDSPGESPKTPQGGFIGTITKGFVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNQMEEVIKFFETNHKDKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCHSAYSWLKEDIENVVVVHCKAGMARTGLMITSLLLFLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGEDQPGRRCMLRGIRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEDFWFAAPRKGIMVFALPGEPGLTELSGDFKIQFHDRQGDFYCWLNTTMMENRTILTTNDLDGFDKRKLPSPGFQVEVVVVDYDPTAQPKPQTETTAKPAESTTTTPAPPPPSDTTSPLPKDSATSEKDDEVFSDNESTGTNTNSSKIENLSDKTKNISISNPGSKQIDTTNEPKQSGSNPIGEVSDFKAMAADASVFTFGDDEDYESD 580
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03217 580 MobiDBLite consensus disorder prediction 459 474 - -
Cind3g03217 580 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 397 451 IPR035892 -
Cind3g03217 580 Gene3D Protein tyrosine phosphatase superfamily 126 323 IPR029021 -
Cind3g03217 580 MobiDBLite consensus disorder prediction 1 39 - -
Cind3g03217 580 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 126 323 - -
Cind3g03217 580 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 154 321 IPR029021 -
Cind3g03217 580 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 255 294 IPR000387 GO:0016311(InterPro)
Cind3g03217 580 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 223 275 - -
Cind3g03217 580 MobiDBLite consensus disorder prediction 52 109 - -
Cind3g03217 580 MobiDBLite consensus disorder prediction 58 82 - -
Cind3g03217 580 ProSiteProfiles Phosphatase tensin-type domain profile. 141 320 IPR029023 -
Cind3g03217 580 Gene3D - 328 454 - -
Cind3g03217 580 ProSiteProfiles C2 tensin-type domain profile. 327 454 IPR014020 -
Cind3g03217 580 ProSitePatterns Tyrosine specific protein phosphatases active site. 257 267 IPR016130 GO:0016311(InterPro)
Cind3g03217 580 SMART PTEN-C2-2 325 453 IPR014020 -
Cind3g03217 580 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 128 541 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cind3g03217 580 MobiDBLite consensus disorder prediction 507 554 - -
Cind3g03217 580 Pfam PTEN2, C2 domain 327 455 - -
Cind3g03217 580 CDD PTP-PTEN 151 315 IPR045101 GO:0016791(InterPro)
Cind3g03217 580 MobiDBLite consensus disorder prediction 456 555 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03217 K01110 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:373071285 Cind9g00092 Cind-Chr9:118989408 dispersed
Cind Cind-Chr3:373071285 Cind9g02991 Cind-Chr9:132618784 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00328 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 54.125 1.40e-121 349.0
Cind1g00405 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 54.902 1.88e-122 351.0
Cind1g00959 . 294 343 Protein tyrosine phosphatase (PTP) family AT5G01290 48.0 5.37e-08 50.1
Cind1g01142 . 6 784 Protein tyrosine phosphatase (PTP) family AT3G55270 48.97 0.0 706.0
Cind1g02565 . 165 229 Protein tyrosine phosphatase (PTP) family AT3G52180 58.462 1.27e-19 80.1
Cind1g03080 . 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 62.766 3.53e-81 238.0
Cind1g03090 . 1031 1080 Protein tyrosine phosphatase (PTP) family AT5G58160 46.0 1.69e-07 50.1
Cind1g05748 . 45 644 Protein tyrosine phosphatase (PTP) family AT5G01290 52.358 0.0 599.0
Cind1g05995 . 1047 1093 Protein tyrosine phosphatase (PTP) family AT5G58160 55.319 4.59e-08 49.3
Cind2g00059 . 74 214 Protein tyrosine phosphatase (PTP) family AT5G56610 31.469 1.02e-09 53.9
Cind2g00889 . 19 840 Protein tyrosine phosphatase (PTP) family AT3G10550 62.945 0.0 1056.0
Cind2g01265 . 464 536 Protein tyrosine phosphatase (PTP) family AT3G01510 38.356 1.90e-06 47.4
Cind2g01844 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 8.31e-07 48.1
Cind2g02398 . 327 417 Protein tyrosine phosphatase (PTP) family AT5G01290 31.868 1.69e-07 47.8
Cind3g01555 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 60.588 4.43e-74 221.0
Cind3g02544 . 55 207 Protein tyrosine phosphatase (PTP) family AT1G05000 81.046 5.18e-95 276.0
Cind3g03217 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 70.105 0.0 817.0
Cind3g03462 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 71.134 5.54e-102 295.0
Cind3g05017 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 62.791 0.0 845.0
Cind3g05105 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 56.213 0.0 726.0
Cind4g03382 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 58.824 7.30e-156 442.0
Cind4g03192 . 16 912 Protein tyrosine phosphatase (PTP) family AT5G23720 64.08 0.0 1115.0
Cind4g03217 . 278 443 Protein tyrosine phosphatase (PTP) family AT3G10550 76.506 4.67e-81 255.0
Cind4g02753 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 60.109 4.73e-81 245.0
Cind4g03840 . 115 153 Protein tyrosine phosphatase (PTP) family AT1G71860 53.659 5.95e-06 45.4
Cind4g03880 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 32.738 3.37e-20 84.3
Cind4g05354 . 249 393 Protein tyrosine phosphatase (PTP) family AT5G01290 46.154 3.05e-35 131.0
Cind4g05778 . 121 158 Protein tyrosine phosphatase (PTP) family AT3G10940 68.421 2.11e-13 67.0
Cind5g00901 . 183 254 Protein tyrosine phosphatase (PTP) family AT3G09100 54.167 3.42e-19 83.6
Cind5g01368 . 87 196 Protein tyrosine phosphatase (PTP) family AT3G09100 51.818 1.27e-28 110.0
Cind5g03505 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.913 2.29e-116 337.0
Cind5g05107 . 75 239 Protein tyrosine phosphatase (PTP) family AT3G44620 73.939 1.98e-88 257.0
Cind6g02063 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 52.211 0.0 674.0
Cind6g04245 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 2.46e-06 46.6
Cind7g02467 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 73.12 0.0 801.0
Cind7g03666 . 56 197 Protein tyrosine phosphatase (PTP) family AT3G02800 61.972 1.41e-61 190.0
Cind7g03769 . 6 186 Protein tyrosine phosphatase (PTP) family AT3G02800 68.508 4.85e-91 263.0
Cind7g03790 . 19 840 Protein tyrosine phosphatase (PTP) family AT3G10550 59.904 0.0 1001.0
Cind7g03808 . 34 378 Protein tyrosine phosphatase (PTP) family AT3G52180 60.405 1.98e-150 426.0
Cind7g04211 . 73 166 Protein tyrosine phosphatase (PTP) family AT5G56610 71.277 9.61e-43 140.0
Cind7g05216 . 98 282 Protein tyrosine phosphatase (PTP) family AT3G10940 82.703 5.50e-117 331.0
Cind8g00350 . 53 186 Protein tyrosine phosphatase (PTP) family AT3G23610 29.677 8.63e-13 64.7
Cind8g01212 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 57.059 8.39e-69 206.0
Cind8g01628 . 123 158 Protein tyrosine phosphatase (PTP) family AT5G23720 63.889 5.20e-07 43.9
Cind8g02117 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 54.61 2.59e-96 282.0
Cind8g03300 . 6 335 Protein tyrosine phosphatase (PTP) family AT1G71860 61.905 3.94e-145 413.0
Cind8g03725 . 62 242 Protein tyrosine phosphatase (PTP) family AT1G71860 48.925 9.48e-47 157.0
Cind9g00092 . 50 611 Protein tyrosine phosphatase (PTP) family AT3G19420 61.228 0.0 707.0
Cind9g00496 . 272 373 Protein tyrosine phosphatase (PTP) family AT3G52180 33.333 6.24e-06 45.8
Cind9g02991 ACH 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 56.281 5.23e-158 454.0
Cind9g03443 . 72 483 Protein tyrosine phosphatase (PTP) family AT3G55270 55.556 3.28e-161 482.0