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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03239 ATGGTCCACCGAGTGATTGATGAGATTGCAGGCGAGTATGCTGGTAAGGTCAAGTGTTTCGTGCTGAATGCTGACCAAGACCCACTAATCGCTGAAGAATATGACATCAAGGCTGTACCCATTGTGCTGTTATTCAAGAACGGTCAGAAATGTGAGTCGGTGGTTGGGACCATGCCCAAAGAATTCTATGTGGCTGCTATCGAAAGGGTCTTGTCATCTTCATCTTGA 228 46.49 MVHRVIDEIAGEYAGKVKCFVLNADQDPLIAEEYDIKAVPIVLLFKNGQKCESVVGTMPKEFYVAAIERVLSSSS 75
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03239 75 SUPERFAMILY Thioredoxin-like 1 72 IPR036249 -
Cind3g03239 75 CDD TRX-family 1 68 - -
Cind3g03239 75 Pfam Thioredoxin 4 67 IPR013766 -
Cind3g03239 75 PANTHER GEO12009P1 1 71 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cind3g03239 75 Gene3D Glutaredoxin 1 72 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03239 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
67961 Cind3g03239 Cind8g02437
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:372617054 Cind8g02437 Cind-Chr8:232494204 dispersed
Cind Cind-Chr3:372589164 Cind3g03239 Cind-Chr3:372617054 proximal