AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03257 ATGTCCTCTTTTTCAGTCAAGTTTCTTGCACCATCTTCATTTCTCAACCCTAAAACATCTACCTTCAACTCCAAGAAACTCCATGCAACTCCTCCTCAACAAACCACAGTTCCATCTCCAGCACCATCTCCAGTTCCAGCAACAGATATCATCAGTCTAGAAAGACTAGAACCTAGAGTTGAGAAAAAAAATGGATATTATATACTTAAGGAAAAGTTTAGACAAGGTATTAATCCACAAGAAAAAGTTAAGATAGCTAGTGAACCTATGAAGCTATTTATGGAAAATGGTATTGAAGATCTTGCTAAGATACCTTTTGAAGATATTGATAAGTCTAAAGATACTAAAGATGATGTTGATGTTAGACTTAAATGGCTTGGTTTGTTTCATCGTAGGAAACATCAATACGGTCGGTTTATGATGAGGTTGAAGCTCCCAAATGGCGTTACAACAAGTGCACAAACTCGATACTTAGCTAGTGTCATTAAGGAGTACGGGGAGCAAGGCTGTGCGGATGTTACCACACGCCAAAACTGGCAAATTCGCGGAGTTACATTACCTGATGTACCCGCAATTCTAAAAGGTCTTGATGAAGTCAGTTTAACTAGTCTTCAGAGTGGTATGGACAATGTTAGGAACCCTGTTGGGAACCCACTTGCAGGGATTGATCCTCATGAAATTGTGGACACAAGGGTTTACACGAATTTGTTATCGCAATTTATCACTGCTAATTCGCGAGGGAACCCTGAATTCACCAACTTGCCAAGGAAATGGAATGTTTGCGTGATTGGTTCACATGATCTCTATGAGCATCCACATATCAACGATCTAGCGTATATGCCAGCTACAAAGAATGGTAAGTTTGGGTTCAACTTGTTGGTGGGTGGATTCTTTAGTCCCAAAAGATGTGCAGAGGCTATTCCTCTCGATGCTTGGGTCCCAGCTGAAGATGTTGTCCCGGTTTGTGGGGCGATTCTTGAGGCTTATCGTGATCTTGGTACAAGAGGGAACAGGCAAAAGACTAGAATGATGTGGTTGATCGATGAACTTGGTGTAGAAGGGTTTCGATCTGAAGTGGTAAAGAGAATGCCCGAACAAGCATTGGAGAGGGCTTCTTCCGAAGATCTTGTTGATCCAAAATGGGAAAGAAGGGATTACTTTGGTGTGCACCCACAAAAACAAGAAGGCCTTAGCTTTGTGGGCATTCACATTCCTGTGGGCCGGGTCCAAGCCGATGACATGGACCAATTAGCCCGGTTAGCCGAAGAATATGGCTCAGGTGAGCTTCGGTTGACAGTGGAACAAAACATCATAATCCCAAACATACCAAACTCAAAAGTCGAAGCTTTACTTAACGAGCCTCTTCTAAAGGAGAAGTTTTTACCCGAGCCACCTATTTTGATGAAAGGGTTGGTAGCTTGCACGGGTAACCAATTTTGCGGACAAGCCATAATTGAGACAAAAGCCCGTGGTTTGAAGGTTGCAGAAGAAGTTGAGAAACTTGTTTCCGTGACCTATCCAGTGCGGATGCACTGGACTGGCTGCCCAAACACGTGTGGCCAGGTTCAAGTGGCGGATATAGGATTTATGGGATGTATGACTAGGGACAAAAATGGAAAGGTAGTAGAAGGAGCCGATGTTTACTTGGGAGGTAGAATTGGAAGTGACTCGCATCTGGGGGATATCTATAAAAAGGCTGTCCCGTGTGAGGACTTGGTGCCTTTAGTTGTGGACATTATGGTCGAAAAATTTGGCGCTGTTCTCAGAGAAAGAGAAGAGAGCGAAGAATGA 1791 43.33 MSSFSVKFLAPSSFLNPKTSTFNSKKLHATPPQQTTVPSPAPSPVPATDIISLERLEPRVEKKNGYYILKEKFRQGINPQEKVKIASEPMKLFMENGIEDLAKIPFEDIDKSKDTKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIKEYGEQGCADVTTRQNWQIRGVTLPDVPAILKGLDEVSLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRVYTNLLSQFITANSRGNPEFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSPKRCAEAIPLDAWVPAEDVVPVCGAILEAYRDLGTRGNRQKTRMMWLIDELGVEGFRSEVVKRMPEQALERASSEDLVDPKWERRDYFGVHPQKQEGLSFVGIHIPVGRVQADDMDQLARLAEEYGSGELRLTVEQNIIIPNIPNSKVEALLNEPLLKEKFLPEPPILMKGLVACTGNQFCGQAIIETKARGLKVAEEVEKLVSVTYPVRMHWTGCPNTCGQVQVADIGFMGCMTRDKNGKVVEGADVYLGGRIGSDSHLGDIYKKAVPCEDLVPLVVDIMVEKFGAVLREREESEE 596
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03257 596 MobiDBLite consensus disorder prediction 13 45 - -
Cind3g03257 596 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 390 454 IPR005117 GO:0016491(InterPro)
Cind3g03257 596 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 132 199 IPR005117 GO:0016491(InterPro)
Cind3g03257 596 Gene3D Sulfite Reductase Hemoprotein, domain 1 200 385 IPR045854 -
Cind3g03257 596 Pfam Nitrite and sulphite reductase 4Fe-4S domain 471 582 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cind3g03257 596 PRINTS Sirohaem Fe-binding site signature 469 487 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cind3g03257 596 PRINTS Sirohaem Fe-binding site signature 513 531 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cind3g03257 596 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 4 595 IPR051329 -
Cind3g03257 596 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 469 580 IPR045854 -
Cind3g03257 596 MobiDBLite consensus disorder prediction 13 34 - -
Cind3g03257 596 Pfam Nitrite and sulphite reductase 4Fe-4S domain 208 365 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cind3g03257 596 Gene3D - 76 457 - -
Cind3g03257 596 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 56 207 IPR036136 GO:0016491(InterPro)
Cind3g03257 596 Gene3D Sulfite Reductase Hemoprotein, domain 1 465 595 IPR045854 -
Cind3g03257 596 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 344 480 IPR036136 GO:0016491(InterPro)
Cind3g03257 596 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 208 365 IPR045854 -
Cind3g03257 596 ProSitePatterns Nitrite and sulfite reductases iron-sulfur-siroheme-binding site. 513 529 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03257 K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]