Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g03487 | ATGATACGAGGAGTAATAATAATAAACGATCAAGGCAAGCCACGCCTTATCAAATTCTACGACTATCAGCCTATTGAGAAACAACACGAAATCATTCGCAACATTTACACAGTACTATGCAATAGAGCGGAAAATGTGAGCAACTTTGTTCAAGTCGATTCCACGTTTGGACCGGATACACGACTTGTATACAAGACTTTCGCTACACTGTACTTCATTGTCATATTTGATGAGTCTGAAAATGAGCTTGCCATTCTAGATCTTATGCAAGTATTCGTGGAGACGTTGGACAAGTGTTTTAGTAATGTTTGTGAGCTCGATATTGTGTTCAATTTCAGCAAGGTACATACCATCCTCAATGAGATCATCTTGGGAGGTCAAGTTGTAGAAATGAGTTCTGCCGAAGTTGTCAAGGCAGTGGACGAGATATCATGGCAAGAGAAGAACAAATTCTCTCATTCGAGCTCCAACGCCACATCTGGCTGGCAGAGACGATAA | 498 | 40.96 | MIRGVIIINDQGKPRLIKFYDYQPIEKQHEIIRNIYTVLCNRAENVSNFVQVDSTFGPDTRLVYKTFATLYFIVIFDESENELAILDLMQVFVETLDKCFSNVCELDIVFNFSKVHTILNEIILGGQVVEMSSAEVVKAVDEISWQEKNKFSHSSSNATSGWQRR | 165 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g03487 | 165 | Gene3D | - | 1 | 159 | - | - | |
| Cind3g03487 | 165 | FunFam | AP complex subunit sigma | 1 | 156 | - | - | |
| Cind3g03487 | 165 | PANTHER | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY | 2 | 144 | IPR016635 | GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER) | |
| Cind3g03487 | 165 | Pfam | Clathrin adaptor complex small chain | 1 | 143 | IPR022775 | - | |
| Cind3g03487 | 165 | PIRSF | AP-complex-sigma | 1 | 157 | IPR016635 | GO:0015031(InterPro) | |
| Cind3g03487 | 165 | ProSitePatterns | Clathrin adaptor complexes small chain signature. | 62 | 72 | IPR000804 | GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro) | |
| Cind3g03487 | 165 | SUPERFAMILY | SNARE-like | 1 | 142 | IPR011012 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g03487 | K12399 | AP-3 complex subunit sigma |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:253288689 | Cind3g03487 | Cind-Chr3:360337788 | dispersed | |
| Cind | Cind-Chr3:360337788 | Cind9g02853 | Cind-Chr9:88271231 | dispersed |