AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03525 ATGATGCTTCAGACAATTATAATGGTGGTTGTCGTATCGTATTTTGTAATGACCGATGTTGTTGTTGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTGTCTCATAATATCGAATATGAAGGCGATACTGTTCATGTTTCTTTCGTTGTAATCAAGGCTGAATCGCCTTGGCATTTCTCTGAAGACGGCGTTGATCTTGTGATTAGAGACCCGACAGGAGAGTTGGTTTATGATGTATATGACAGCGCTAGTGAGAAGCACGAGTTCATAGCTCATAAAAAAGGTTTATATAACTTTTGTTTCACAAACAAGTCTCCGTATCACGAGACTGTTGACTTTGATGTTCAAGCTGGACATTTTGCACACTATGATCAGCATGCAAAAGATGAGCATATCAAGCCGTTGTTTGATCAGATAGCAAAACTGGAAGAAGCTCTATACAACATTCAGTTTGAACAGCATTGGTTACAAGCTGAGAATGATCGCCAGGCAGTTGTAAATGAAAAAATGGGTAAGAGAGCAGTCCACAAGGCGCTGATTGAATCAGCAGCACTGATTGGAGCTAGCATCCTCCAGGTTTATCTTCTGCAACGCCTGTTTGAGCGAAAGCTTGGATCTTCAAGAGTGTAA 633 40.13 MMLQTIIMVVVVSYFVMTDVVVGIRFVIDREECLSHNIEYEGDTVHVSFVVIKAESPWHFSEDGVDLVIRDPTGELVYDVYDSASEKHEFIAHKKGLYNFCFTNKSPYHETVDFDVQAGHFAHYDQHAKDEHIKPLFDQIAKLEEALYNIQFEQHWLQAENDRQAVVNEKMGKRAVHKALIESAALIGASILQVYLLQRLFERKLGSSRV 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03525 210 Pfam emp24-gp25L-p24 family-GOLD 30 202 IPR009038 -
Cind3g03525 210 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 10 202 IPR015720 GO:0005783(PANTHER)|GO:0005793(PANTHER)|GO:0005794(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0007030(PANTHER)|GO:0030134(PANTHER)
Cind3g03525 210 SMART EMP24-GP25L-2 23 202 IPR009038 -
Cind3g03525 210 ProSiteProfiles GOLD domain profile. 31 118 IPR009038 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03525 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr2:348151162 Cind3g03525 Cind-Chr3:343149215 dispersed
Cind Cind-Chr2:348126707 Cind3g03525 Cind-Chr3:343149215 dispersed
Cind Cind-Chr3:343149215 Cind2g05597 Cind-Chr2:348153245 dispersed
Cind Cind-Chr1:355627600 Cind3g03525 Cind-Chr3:343149215 wgd