AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g03527 | ATGGCCCCAGCTGCTGTAGCAGATGGTTCTGATAAGATTAAACCTAGAGATGTATGTATTGTTGGTGTTGCACGTACGCCACTTGGTGGATTTCTTGGTTCTCTTTCATCTTTACCCGCAACCAAACTTGGGTCCATAGCTATTGAATGTGCTCTAAAGAGGGCAAATGTTGACCCATCACTCGTAGAAGAAGTTTATTTTGGAAATGTTCTTGGTGCAAATTTGGGACAGGGTCCTGCCCGACAAGCAGCGTTAGGGGCAGGAATTCCCAATACAGTGGTCTCAACATCTGTCAACAAAGTTTGTGCTTCGGGGATGAAAGCAACTATGTTGGCAGCACAGAGTATCCAATTGGGTCAAAATGATATAGTCGTGGCTGGTGGTATGGAAAGCATGTCTAACGTCCCCAAATATATTGCAGAAGCAAGGAAGGGGTCTAAATTTGGACATGACACTCTTGTTGATGGAATCATGAAAGACGGGTTGTGGGATGTTTTCAATGATTTTAAAATGGGAAACGCTGCTGAAATATGTGCAGATACACATGGTTTTACAAGAGAACAACAGGATGATTACGCCATTCAGAGCTTTGAACGTGGTTTAGCTGCCAGAGATAGTGGTGCCTTTGCATGGGAAATTGCCCCTGTTGAAGTTCCTGGCCCAAGAGGAAGACCATCGACAATTGTTGACAAAGATGATGATTTGGGGAAGTTTGATGCTGCAAAGTTGAGGAAGCTGCGGCCAGCTTTCAAGGAAGATGGTGGCAGTGTTACTGCCGGCAATTCATCTGGCATAAATGATGGTGCTGCTGCACTTGTCTTGGTAAGTGGGGAGAAGGCGCTTAAGCTTGGGTTGCATGTGATCGCAAAGGTTTCTGGATATGCTGATGCTGAACAGGCACCTGAGTTATTTACAACTACCCCAGCCCTTGCCATACCAAAGGCTATTTCAAGAGCCGGATTGGATGCTTCTCAAATAGATTTCTATGAAATTAATGAAGCATTTGCTGTCGTGGCTCTAGCAAACCAGAAATTGCTTGGTTTGGATTCATCGAAGCTTAATGTACATGGTGGTGGTGTGTCGTTGGGACATCCTCTAGGTTGCAGTGGTGCTCGCATCTTGGTCACTCTTTTGGGGGTTTTGAAGCAGAAAGGTGGCAAATACGGAGCAGCAGGTGTGTGTAATGGAGGAGGAGGTGCATCAGCTTTCGTTGTGGAACTTCTGTAA | 1227 | 45.48 | MAPAAVADGSDKIKPRDVCIVGVARTPLGGFLGSLSSLPATKLGSIAIECALKRANVDPSLVEEVYFGNVLGANLGQGPARQAALGAGIPNTVVSTSVNKVCASGMKATMLAAQSIQLGQNDIVVAGGMESMSNVPKYIAEARKGSKFGHDTLVDGIMKDGLWDVFNDFKMGNAAEICADTHGFTREQQDDYAIQSFERGLAARDSGAFAWEIAPVEVPGPRGRPSTIVDKDDDLGKFDAAKLRKLRPAFKEDGGSVTAGNSSGINDGAAALVLVSGEKALKLGLHVIAKVSGYADAEQAPELFTTTPALAIPKAISRAGLDASQIDFYEINEAFAVVALANQKLLGLDSSKLNVHGGGVSLGHPLGCSGARILVTLLGVLKQKGGKYGAAGVCNGGGGASAFVVELL | 408 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g03527 | 408 | ProSitePatterns | Thiolases signature 2. | 354 | 370 | IPR020613 | GO:0016747(InterPro) | |
| Cind3g03527 | 408 | PANTHER | ACETYL-COA C-ACYLTRANSFERASE | 17 | 407 | - | GO:0003985(PANTHER)|GO:0005739(PANTHER)|GO:0006635(PANTHER) | |
| Cind3g03527 | 408 | Gene3D | - | 14 | 407 | IPR016039 | GO:0016746(InterPro) | |
| Cind3g03527 | 408 | NCBIfam | acetyl-CoA C-acyltransferase | 20 | 406 | IPR002155 | GO:0016747(InterPro) | |
| Cind3g03527 | 408 | FunFam | acetyl-CoA acetyltransferase, mitochondrial | 13 | 408 | - | - | |
| Cind3g03527 | 408 | Pfam | Thiolase, C-terminal domain | 286 | 406 | IPR020617 | GO:0016747(InterPro) | |
| Cind3g03527 | 408 | SUPERFAMILY | Thiolase-like | 17 | 285 | IPR016039 | GO:0016746(InterPro) | |
| Cind3g03527 | 408 | SUPERFAMILY | Thiolase-like | 288 | 407 | IPR016039 | GO:0016746(InterPro) | |
| Cind3g03527 | 408 | ProSitePatterns | Thiolases active site. | 389 | 402 | IPR020610 | GO:0016747(InterPro) | |
| Cind3g03527 | 408 | PIRSF | Ac-CoA-Ac-transf | 12 | 408 | IPR002155 | GO:0016747(InterPro) | |
| Cind3g03527 | 408 | Pfam | Thiolase, N-terminal domain | 18 | 277 | IPR020616 | GO:0016747(InterPro) | |
| Cind3g03527 | 408 | CDD | thiolase | 20 | 406 | IPR002155 | GO:0016747(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g03527 | K00626 | acetyl-CoA C-acetyltransferase [EC:2.3.1.9] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 67978 | Cind3g03527 | Cind8g02158 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:343155875 | Cind7g02827 | Cind-Chr7:46242547 | dispersed | |
| Cind | Cind-Chr2:91378223 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr3:482908 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr3:46367162 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr4:41904307 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr4:120149528 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr5:221544390 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr7:184479606 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr8:105548613 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr8:87955125 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr9:225340653 | Cind3g03527 | Cind-Chr3:343155875 | transposed | |
| Cind | Cind-Chr3:343155875 | Cind8g02158 | Cind-Chr8:246721707 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind2g03134 | . | 263 | 337 | AACT gene family | AT5G47720 | 68.0 | 4.38e-26 | 99.8 | |
| Cind3g01628 | . | 5 | 405 | AACT gene family | AT5G47720 | 78.803 | 0.0 | 655.0 | |
| Cind3g03527 | ACH | 1 | 405 | AACT gene family | AT5G47720 | 77.206 | 0.0 | 650.0 | |
| Cind3g03661 | . | 275 | 337 | AACT gene family | AT5G47720 | 77.778 | 8.15e-27 | 101.0 | |
| Cind4g01467 | . | 262 | 337 | AACT gene family | AT5G47720 | 51.852 | 7.10e-16 | 71.2 | |
| Cind4g02225 | . | 349 | 405 | AACT gene family | AT5G47720 | 73.684 | 4.37e-24 | 92.8 | |
| Cind5g01343 | . | 275 | 351 | AACT gene family | AT5G47720 | 68.831 | 2.27e-26 | 101.0 | |
| Cind6g01105 | . | 223 | 282 | AACT gene family | AT5G47720 | 60.0 | 1.19e-14 | 67.8 | |
| Cind7g01024 | . | 348 | 405 | AACT gene family | AT5G47720 | 82.759 | 8.04e-26 | 99.0 | |
| Cind7g02827 | . | 234 | 294 | AACT gene family | AT5G47720 | 67.213 | 1.08e-20 | 85.9 | |
| Cind8g01841 | . | 252 | 337 | AACT gene family | AT5G47720 | 62.5 | 8.89e-26 | 100.0 | |
| Cind8g02158 | ACH | 1 | 404 | AACT gene family | AT5G47720 | 75.676 | 0.0 | 644.0 | |
| Cind9g03344 | . | 263 | 351 | AACT gene family | AT5G47720 | 61.798 | 2.87e-26 | 100.0 |