AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03528 ATGGCGGCAATACTGGCTTCCAACAGCTGCTATTGCCGTGATGTGCAATTCGTGAACCAAGGAAGAACAACAGACAGTCTCAGCTTCTCGAGATCTGTATCTAACCAAAAACTAGACCAACATGAATGTACTTTACGCAAAAGTCAAAGGTTCCCCAAGTTTCATGTCAAGATGCAGCAGACGGAATCACCCATGAAATATGGCACCAACGGTCGACCTACAAATGCCCAGCCTGTAAAATTGGGTGCTAATGGTAAACCAGTGAATTTGGGTGTTAATGGACAACCCGTGAAATTAGGTAGCAAAGGTCAACCGATCACGATGGTTTCCACCAGTGACGTGGTAAATAACAAACAAACAGCCGGAATAGTGAATGGGTCGACAAAAGTTGTTAATGGGACAAGTCTTGTTAGGAGACCGACCACACCGCCTCTAGTTAAGTCTGTAAAAGTTAGAGAATCCACAGGCTTTCCGCCTTCTGAGGAATTGAGGGTCTTGCCGTCTGACGAAAGTTTCAGTTGGGCGAATGAGAATTATAATTCGGTACAAAGATCAATAGATGTGTGGTCTTTTGTACTTTCTTTACGTGTTCGTGTTTTATTAGACAATGCTAAGTGGGCGTATCCTGGAGGCTTCACAGAAGACAAACAGAAAGGCAGAAGAAGAAAGACGGCTGCATGGTTAAGAGAGCGTGTCCTTCAACTTGGTCCAACTTTTATTAAACTTGGGCAGTTATCTTCAACAAGATCAGATCTATTTCCACGTGAATTTGTCGACGAGCTCGCCAAATTACAGGATAGAGTACCGGCATTCTCACCAGAAAAAGCGAAGGGTTTCATTGAAAAAGAATTGGGTGCTCCGGTTAATATAATCTTTAAGGAGTTTGAAGAACGACCAATTGCAGCTGCTAGTCTTGGTCAGGTACATCGTGCAATCTTACATAATGGAGAGAAAGTAGTTGTTAAAGTTCAAAGACCTGGTCTGAAGAAACTTTTTGACATCGATTTACGGAATCTAAAGCTAGTCGCAGAGTATTTTCAAAGAAGTGAAACTCTTGGTGGCCCAACAAGGGACTGGATGGGAATCTATGATGAATGTGCAAAGATCTTGTACCAGGAGATTGATTATATAAATGAAGGGAAAAATGCTGATAGATTTCGTCGGGACTTCAGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACTGCAACGAAGGTGCTGACTTTGGAGTATGTTCCAGGCATTAAGATCAACAATATAGATGCTATAAAAGAGAGGAGTTACAGTCGATCCCGGATCTCTTCACGCGCCATTGAATCATACTTGATTCAGATCTTGAAAACAGGTTTCTTTCATGCTGATCCTCATCCTGGAAATCTTGCTATTGACGTGGACGAATCACTAATCTACTATGATTTTGGCATGATGGGGGAGATTAAGTCCTTCACCAGAGAAAGATTAATGGATCTTTTTTATGCGGTTTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTGGTAAGTCTTGAAGCCCTTCAACCTACTGGAGACATGTCACCGTATGTTAGGCGATCCATTCAGTTCTTTTTGGACAATTTGCTGAATCAATCACCAGATCAGCAGACAACTTTGGCTGCCATAGGCGAGGATTTATTTTCTATAGCAACGGATCAGCCTTTTCGGTTCCCGTCCACCTTCACGTTTGTAATTAGGGCATTTTCCACTCTTGAAGGAATTGGCTACTCACTTGACCCAGATTTTTCATTTGTTAAGATTGCTGCACCTTACGCACAGGAACTGTTAGATCTCAAAGAACAGCGGCCAAGTGGAACACAACTTGTTGCTGAAATGCGAAAACAAGCTGATGATGCAAGATCAAATACCATGTCGATGCCTTACCGAGTTCAGCGAATTGAAGAGTTTGTGAAACAGCTAGAAATAGGAGGCGTTAAACTTCGTGTCAGAGTTCTTGAGTCTGAACGAGCAGCTAAGAAGGCAACAATATTGCAAATGGCAACAATGTATACAATAATTGGGGGTACCCTTGTAAACATTGGTGTCACATTTAACACACAAGGCAGCCAACTTATAGCAAACGGGTCCTTTGTTGCCGCAGGTGTTTTCATAGCTTTGCTTATTAGGTCCATGCAAAGGGTGAAGAAGCTTGATAAATTCGAGAAGATGATATAG 2202 41.96 MAAILASNSCYCRDVQFVNQGRTTDSLSFSRSVSNQKLDQHECTLRKSQRFPKFHVKMQQTESPMKYGTNGRPTNAQPVKLGANGKPVNLGVNGQPVKLGSKGQPITMVSTSDVVNNKQTAGIVNGSTKVVNGTSLVRRPTTPPLVKSVKVRESTGFPPSEELRVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLLDNAKWAYPGGFTEDKQKGRRRKTAAWLRERVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKGFIEKELGAPVNIIFKEFEERPIAAASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLRNLKLVAEYFQRSETLGGPTRDWMGIYDECAKILYQEIDYINEGKNADRFRRDFSNIKWVRVPQVFWDYTATKVLTLEYVPGIKINNIDAIKERSYSRSRISSRAIESYLIQILKTGFFHADPHPGNLAIDVDESLIYYDFGMMGEIKSFTRERLMDLFYAVYEKDAKKVMNSLVSLEALQPTGDMSPYVRRSIQFFLDNLLNQSPDQQTTLAAIGEDLFSIATDQPFRFPSTFTFVIRAFSTLEGIGYSLDPDFSFVKIAAPYAQELLDLKEQRPSGTQLVAEMRKQADDARSNTMSMPYRVQRIEEFVKQLEIGGVKLRVRVLESERAAKKATILQMATMYTIIGGTLVNIGVTFNTQGSQLIANGSFVAAGVFIALLIRSMQRVKKLDKFEKMI 733
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03528 733 CDD ABC1-ADCK3-like 263 510 - -
Cind3g03528 733 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 40 662 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
Cind3g03528 733 SUPERFAMILY Protein kinase-like (PK-like) 265 510 IPR011009 -
Cind3g03528 733 Pfam ABC1 atypical kinase-like domain 263 509 IPR004147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03528 K03688 ubiquinone biosynthesis protein
Cind3g03528 K08869 aarF domain-containing kinase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr2:202912816 Cind3g03528 Cind-Chr3:343182841 dispersed
Cind Cind-Chr3:343182841 Cind7g03337 Cind-Chr7:145152544 dispersed
Cind Cind-Chr3:343182841 Cind4g03123 Cind-Chr4:301109000 transposed