AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g03532 | ATGGCGGATTCAGACAACGAGGCAGGCGGAGAGCTATCAGCAAGAGAACAAGACAGGTTCCTGCCGATAGCCAACGTGAGCAGGATCATGAAGAAAGCGTTACCAGCAAATGCCAAGATATCGAAAGATGCGAAAGAGACTGTGCAGGAATGTGTGTCGGAGTTTATTAGTTTTATTACAGGTGAAGCTTCGGATAAGTGTCAGAGGGAGAAAAGGAAGACCATCAATGGTGATGATTTGCTTTGGGCTATGACTACTTTAGGGTTTGAGGAGTATGTTGACCCTTTGAAGGCGTATTTAGCAAAATACCGAGAAATGGAAGGCGAAAAGACTATAGGACGACAAGGCGAGAATGATGGGTCATCAGGAGGCGGTGGTGGTGCGAATCCTGGTGGGTATAATGATGGTGGTGGGATGTATGGAGGGATGCAGAATAGTATGGTGATGGGTAGGACGCAACACCAAATGTATAACTCGAATCCGGGTTCGTATCAGCAAATGAGCTTGGGTAGTCCGAAAGGCGGTTTGGGCCGATCCGGCAGCTTTGGTGGCGGCTCTGGTGGAAGTTCTACTGTGAAGCCTAGGTAG | 588 | 48.47 | MADSDNEAGGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKAYLAKYREMEGEKTIGRQGENDGSSGGGGGANPGGYNDGGGMYGGMQNSMVMGRTQHQMYNSNPGSYQQMSLGSPKGGLGRSGSFGGGSGGSSTVKPR | 195 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g03532 | 195 | FunFam | Nuclear transcription factor Y subunit B-3 | 9 | 129 | - | - | |
| Cind3g03532 | 195 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 11 | 148 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
| Cind3g03532 | 195 | Pfam | Histone-like transcription factor (CBF-NF-Y) and archaeal histone | 20 | 84 | IPR003958 | - | |
| Cind3g03532 | 195 | MobiDBLite | consensus disorder prediction | 146 | 172 | - | - | |
| Cind3g03532 | 195 | MobiDBLite | consensus disorder prediction | 110 | 195 | - | - | |
| Cind3g03532 | 195 | ProSitePatterns | NF-YB-HAP3 subunit signature. | 51 | 67 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cind3g03532 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 48 | 66 | - | - | |
| Cind3g03532 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 67 | 85 | - | - | |
| Cind3g03532 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 86 | 104 | - | - | |
| Cind3g03532 | 195 | Gene3D | Histone, subunit A | 10 | 126 | IPR009072 | GO:0046982(InterPro) | |
| Cind3g03532 | 195 | SUPERFAMILY | Histone-fold | 17 | 119 | IPR009072 | GO:0046982(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g03532 | K08065 | nuclear transcription Y subunit beta |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 67979 | Cind3g03532 | Cind8g02155 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr2:347523735 | Cind3g03532 | Cind-Chr3:343441065 | dispersed | |
| Cind | Cind-Chr3:343441065 | Cind5g04090 | Cind-Chr5:254634094 | dispersed | |
| Cind | Cind-Chr1:312312616 | Cind3g03532 | Cind-Chr3:343441065 | transposed | |
| Cind | Cind-Chr1:144134310 | Cind3g03532 | Cind-Chr3:343441065 | transposed | |
| Cind | Cind-Chr7:188435557 | Cind3g03532 | Cind-Chr3:343441065 | transposed | |
| Cind | Cind-Chr8:199777179 | Cind3g03532 | Cind-Chr3:343441065 | transposed | |
| Cind | Cind-Chr3:343441065 | Cind8g02155 | Cind-Chr8:246866557 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g02117 | . | 1 | 160 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 74.699 | 6.36e-80 | 233.0 | |
| Cind1g04302 | . | 1 | 153 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 75.325 | 2.90e-76 | 224.0 | |
| Cind1g04506 | . | 1 | 136 | CCAAT-HAP3 Transcription Factor family | AT1G09030 | 56.934 | 1.25e-50 | 156.0 | |
| Cind1g07095 | . | 51 | 157 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 70.27 | 2.55e-55 | 169.0 | |
| Cind2g05615 | . | 1 | 126 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 86.508 | 9.95e-77 | 226.0 | |
| Cind3g02275 | . | 35 | 201 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 65.68 | 2.27e-68 | 206.0 | |
| Cind3g03532 | ACH | 1 | 126 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 83.333 | 2.93e-72 | 214.0 | |
| Cind3g03605 | . | 37 | 160 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 74.4 | 4.48e-64 | 196.0 | |
| Cind4g00497 | . | 1 | 201 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 61.275 | 2.72e-75 | 228.0 | |
| Cind4g00610 | . | 6 | 156 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 70.588 | 6.13e-74 | 217.0 | |
| Cind4g04492 | . | 4 | 201 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 60.5 | 7.70e-74 | 221.0 | |
| Cind5g03761 | . | 35 | 213 | CCAAT-HAP3 Transcription Factor family | AT2G13570 | 61.453 | 5.44e-63 | 192.0 | |
| Cind5g04090 | . | 1 | 173 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 75.419 | 3.83e-85 | 246.0 | |
| Cind6g01220 | . | 43 | 157 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 77.391 | 7.91e-62 | 187.0 | |
| Cind7g02238 | . | 126 | 202 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 46.154 | 6.63e-11 | 54.7 | |
| Cind7g02253 | . | 8 | 168 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 74.556 | 6.19e-82 | 238.0 | |
| Cind7g02563 | . | 100 | 201 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 58.252 | 3.40e-30 | 108.0 | |
| Cind7g03341 | . | 8 | 108 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 74.257 | 3.17e-52 | 161.0 | |
| Cind7g03344 | . | 8 | 108 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 74.257 | 3.32e-52 | 162.0 | |
| Cind7g03347 | . | 8 | 108 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 74.257 | 1.36e-52 | 163.0 | |
| Cind7g04593 | . | 5 | 116 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 75.893 | 6.49e-61 | 185.0 | |
| Cind8g02155 | ACH | 1 | 124 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 86.29 | 1.70e-74 | 220.0 | |
| Cind8g03201 | . | 1 | 98 | CCAAT-HAP3 Transcription Factor family | AT1G09030 | 71.717 | 5.03e-51 | 156.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cind | CBFD_NFYB_HMF | 1.2e-27 | CL0012 | TF | NF-YB |