AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03544 ATGGTGGGTCTGTCTATTGGAGAAAAGCACTTTATACAAGGTGGAATTGCTCAAGACCTTCGTACTGATGGCCGTAAAAGATTAACTTACCGCCCTATAGTTGTGGAAACTGGTGTCATTGCCCAAGCAAATGGTTCAGCAAGAGTGAAGATGGGCAGAACTGAAGTCATTGCCAGTGTTAAGGCTGAACTAGGAAGGCCAACTTCTTCAGCGCCCGACAAAGGAAAAGTTTCCATATATATTGATTGTAGTCCCACAGCGGCACCAGAATTCGAGAGGAGAGGTGGTGAAGAATTGTCGATGGAACTGTCAGCAGCATTACGACAATGTCTTTTGGGAGGTAAAACCGGTGCAGGAGCTGGAATTAATCTTTCATCTTTGTCGATAGTGGATGGGAAGGTCTGTTGGGATCTGTATATTGATGGTCTTGTGATTAGTATGGATGGAAATGTACTTGATGCTTTGGGTGCTGCCATCAAGGCTGCTTTAAGCAATACAGGCATTCCGAAAGTCAATGTTGCATCAGCCACTCCTACTGATGAACAGCCAGAGGTTGATGTGAGTGATGAAGAATTTCTACAGTTCGACACCACTGCGGTCCCGGTCATTGTTACTTTAACTAAGGTTGGACGGCATTACATTGTAGATGCAACTTCAGAGGAGGAATCACAAATGAGCTCTGCTGTATCTGTTTCAATCAACAGGCAAGGATTGATTTGTGGGTTTTAA 729 44.31 MVGLSIGEKHFIQGGIAQDLRTDGRKRLTYRPIVVETGVIAQANGSARVKMGRTEVIASVKAELGRPTSSAPDKGKVSIYIDCSPTAAPEFERRGGEELSMELSAALRQCLLGGKTGAGAGINLSSLSIVDGKVCWDLYIDGLVISMDGNVLDALGAAIKAALSNTGIPKVNVASATPTDEQPEVDVSDEEFLQFDTTAVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSINRQGLICGF 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03544 242 Pfam 3' exoribonuclease family, domain 1 30 169 IPR001247 -
Cind3g03544 242 SUPERFAMILY Ribosomal protein S5 domain 2-like 4 223 IPR020568 -
Cind3g03544 242 SUPERFAMILY Ribonuclease PH domain 2-like 196 241 IPR036345 -
Cind3g03544 242 Gene3D - 3 242 IPR027408 -
Cind3g03544 242 FunFam Exosome complex component RRP42 3 242 - -
Cind3g03544 242 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 1 241 IPR050590 GO:0000176(PANTHER)|GO:0000177(PANTHER)|GO:0000467(PANTHER)|GO:0016075(PANTHER)|GO:0017091(PANTHER)|GO:0034427(PANTHER)|GO:0034473(PANTHER)|GO:0034475(PANTHER)|GO:0034476(PANTHER)|GO:0043928(PANTHER)|GO:0071028(PANTHER)|GO:0071035(PANTHER)|GO:0071038(PANTHER)|GO:0071042(PANTHER)
Cind3g03544 242 CDD RNase-PH-RRP42 4 241 - -
Cind3g03544 242 Pfam 3' exoribonuclease family, domain 2 200 240 IPR015847 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03544 K12589 exosome complex component RRP42