AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03546 ATGGAATTGAACATAGAAGAAGCGTTTAGAGCGAAAGAGCATGCAGAGAAGCTATTTTTGTATGAATATCTTAGAAAATACGTGAATAAAAGACTTTCGTGTAAGAATTGTCGTGGGGTTTTTGTAGCTGTTGAAACGGGATCAGCTCCTGTTACTTATTGTCCTTGGTCTTATACGAGTGACAATAATGGTTATGCAAACCATTCGTATAATACTAATGGTGCTACGTATATACCAAATTCATCAGTATGTTTCACAGGCAATGGGTCGTCTACTTATCCACCTGCACACACATCCGAATATGGGAGCAATGCAACCTTCCAGTGGAACACTTCTACGGGTGCTTCTGATCTCAGTGTTGTTCATAAGAGGAATAAAAGACGACAATCCCATGTGGGTCCTGGTGAAATCAAGGTTGTTAAGCTGGGTAGGCCTCGAAAAAAGAGAAAGATTGAACCGGGAAATGGAACTCAACCCACAAATGGTGAAATGTTATTCAAAACCGAGCCTTATGTGGCAGCGTCTAATGGGCATATTGTCAATGAGACGTCTGTCAAGTGGTATCCTGCTCCACCTACTCTTGATACTAGGAAGTTGTTAATTGACAAAGCGAGATCAGTCATTCGGGTTAAGTTAGAAGAAATAAAATTAGCTTCAAAAAACGAGAAAGCGATGAAAAAAACAGATCCGGTTCCGATAACCGTCCCAGACCCAGATTTCCATGATTTTGATAGGGATCGATTGGAGGAAGTATTCAAACCGAAGCAAATATGGGCTATATATGATGAAGAAGACGGTATGCCTCGTTTATATTGTCTAATCCGTGAAGTTATATCTGTGAAGCCGTTTCAGCTCTATATTAGTTACTTGAACTCAAAAACCGACACCGAGTTTGGTTGTGTAAAATGGATCGAATCGGGATTTACTAAATCATGTGGAAACTTCCGTGTTTTCCATTCTGATATCGTTGACCAAGTCAACATCTTTTCTCATCTTTTAGGACGAGAAAAAGCTGGTAGAGGAGGTTGTGTTAAAATATACCCGAAAAGTGGTGACGTATGGGCAGTTTATCGAAACTGGTCGGTTAACTGGAACCGCAAGACACCAGAAGAAGTGAGGCATCAGTATGAAATGGTTGAAATTCTTGAAGATTATTCTGAAGAGCTTGGAATACGTGTAACTCCGTTGGTTAAGTTAAACGGTTATAAAACCGTTTATCAAAGGGACGAGAAAAAGAATGGGACCCGCTGGATCCCGAGAAGGGAAATGGTAAGATTTTCACATCAAGTTCCGTCTTGTTTACTTAAAGGTCAAGGACTTAACTTGCCTGATGGATGTTGGGATCTTGACCCTGCTGCAACCCCTGAAGAACTTCTTCAGGCTGCAGTTGATGAAGAAAAACCCGATCTTAATGTACAAACATAA 1425 40.56 MELNIEEAFRAKEHAEKLFLYEYLRKYVNKRLSCKNCRGVFVAVETGSAPVTYCPWSYTSDNNGYANHSYNTNGATYIPNSSVCFTGNGSSTYPPAHTSEYGSNATFQWNTSTGASDLSVVHKRNKRRQSHVGPGEIKVVKLGRPRKKRKIEPGNGTQPTNGEMLFKTEPYVAASNGHIVNETSVKWYPAPPTLDTRKLLIDKARSVIRVKLEEIKLASKNEKAMKKTDPVPITVPDPDFHDFDRDRLEEVFKPKQIWAIYDEEDGMPRLYCLIREVISVKPFQLYISYLNSKTDTEFGCVKWIESGFTKSCGNFRVFHSDIVDQVNIFSHLLGREKAGRGGCVKIYPKSGDVWAVYRNWSVNWNRKTPEEVRHQYEMVEILEDYSEELGIRVTPLVKLNGYKTVYQRDEKKNGTRWIPRREMVRFSHQVPSCLLKGQGLNLPDGCWDLDPAATPEELLQAAVDEEKPDLNVQT 474
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03546 474 PANTHER BNAC03G44070D PROTEIN 20 454 - -
Cind3g03546 474 Pfam Domain of unknown function (DUF3444) 232 438 IPR024593 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03546 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
67980 Cind3g03546 Cind8g02151
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:344330613 Cind9g01641 Cind-Chr9:265774302 dispersed
Cind Cind-Chr1:270653070 Cind3g03546 Cind-Chr3:344330613 transposed
Cind Cind-Chr5:934701 Cind3g03546 Cind-Chr3:344330613 transposed
Cind Cind-Chr1:354201359 Cind3g03546 Cind-Chr3:344330613 wgd
Cind Cind-Chr3:344330613 Cind8g02151 Cind-Chr8:247124430 wgd