AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g03790 ATGATTGAACCACTCATTGGTAGGAGTGTTCAAAATCAGTTGCATATGGATACTTGTAAATATTCAGGCATCATTGAGGACTGCTGTTGTGACTACGAGAGCGTTAACAATGTTAATGGAGCAATTTTACATCCCTTGTTGCAACAGCTTGTTACAACTCCCTTCTTCCGATATTTTAAGGTGAAGTTATGGTGCGATTGCCCCTTCTGGCCTGATGATGGAATGTGCCGCCTGCGTGATTGCAGTGTATGCGAGTGTCCAGAACATGAATTCCCAGAATCTTTTAAGAAACCATCACCGTATATTCTTCCAAAAGATGATCCTGTATGTCAAGAAGGAAAGCCTGAGGCTACAGTTGACCGTACTCTGGATGCTAAGTCTTTTAATGGCTGGGTTGAAATAGATAATCGATGGACTCATGATGATGAAACTGATAATGGTGAAATGACGTATGTGAACCTGCAATTGAACCCTGAACGTCATACGGGTTACACAGGGCCATCAGCAAGAAGAATATGGGATGCTATATACTCAGAATATTGTCCAAGATATGCATATGGAGAGACGTGCCCTGAAAAGAAAGTACTATACAAGCTAATATCTGGTTTGCACTCCTCAATTTCTATCCATATAGGTGCAGATTATCTACTTGACGAGAGTAGCTATAAGTGGGGTCCAAATCCTGAATTGATGTATAATCGTGTCTTGAAACATCCTGATCGCGTGGAAAACTTGTACTTCACTTTCCTGTTTGTGCTTAGAGCTGTGACAAAAGCGGCTGCTTACCTGGATCAGGCCGAGTATGATTCTGGTAACCATGTGGAGGATCGTAGAGTCCAATCCTTAATTCGACAAATGGTTCACAATTCTGAACTGCAAGCTGCATGTGCTCTTCCATTTGATGAGGCTGAGCTGTGGCAAGGCCAAGGTGGACCCATACTCAGGCAACAGATCCAAAATCAGTTTCGAAACATCAGTGCACTCATGGACTGCGTAGGGTGTGAGAAGTGTCGTCTTTGGGGAAAACTTCAAGTTCTTGGTCTTGGAACTTCATTGAAGATTCTGTTCTCTGTCAATGATCAGAGTAACCCGGACCCACATCTGCAGTTACAAAGAAATGAAGTGATTGCTTTAATTAATCTACTAAATCGGCTATCAGAATCCCTTATATATGTTACTACAATAAAACTACCCGCTACAGATGTGGAAGAACCTGACCTAACTGAAGTTGAAGATGAGAACAATCAAGTGAAGAAAAGAACTTTGTTGTTCATGGTTCATATGTTTCTGCGAGGGTAG 1299 41.88 MIEPLIGRSVQNQLHMDTCKYSGIIEDCCCDYESVNNVNGAILHPLLQQLVTTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPEHEFPESFKKPSPYILPKDDPVCQEGKPEATVDRTLDAKSFNGWVEIDNRWTHDDETDNGEMTYVNLQLNPERHTGYTGPSARRIWDAIYSEYCPRYAYGETCPEKKVLYKLISGLHSSISIHIGADYLLDESSYKWGPNPELMYNRVLKHPDRVENLYFTFLFVLRAVTKAAAYLDQAEYDSGNHVEDRRVQSLIRQMVHNSELQAACALPFDEAELWQGQGGPILRQQIQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTSLKILFSVNDQSNPDPHLQLQRNEVIALINLLNRLSESLIYVTTIKLPATDVEEPDLTEVEDENNQVKKRTLLFMVHMFLRG 432
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g03790 432 PIRSF ERO 6 429 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Cind3g03790 432 SUPERFAMILY ERO1-like 30 396 IPR037192 -
Cind3g03790 432 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 43 390 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Cind3g03790 432 PANTHER ERO1-RELATED 11 399 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(PANTHER)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g03790 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:338155215 Cind8g03380 Cind-Chr8:22502418 dispersed
Cind Cind-Chr1:357855274 Cind3g03790 Cind-Chr3:338155215 wgd