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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g04057 ATGCTTTTGTTTCTCCAGGAGTTACCTGAAGGCAGTTATTATTGCTTAAAGTGCTGTTGTGGGAGTTGCGGGAATGTAGTCAGACATAAGGAGGCTCGAGTCTCAAATTCTTTGAAATGTTTGCAGTGCGAACACAAATATCACAAGAGATGCACCAAAGGGAAAGGGATTAAGAAAAAGTTGGTAGGTTCTACGTGGTTCTGTGGAGAAACATGTGAGAAGATCCATTCAGATCTTGATTCTCGGATTGGACGTGTGAATCCAATCTCTGATGGTTTCTCGTGGACCCTTCTGAAGTGTATTCATGGTGACGAAAGGGTTAATTCTGCACAGGATTATGTTGCCCTGAAGGCAGAATGCAATTTAAAACTAGCTGTTGCCCTTACAATCATGGAGGAATGCTTTGTTCCTATGGTGGATACAAGGACAGGTATCCATATGCTACCGCATGTATTGTACAATTGGGGATCAGAATATGTTCGTCTCAACTATGAGGGATTCTACACAATTGTCCTTGAGAAAGATGACATTTTACTCTGTGTTGCATCCTTGAGGATTCATGGTGCAACTGTTGCGGAAATGCCGCTTATTGCAACATGCAGTAGACATAGGCGCCAAGGAATGTGTAGGCGCCTCATGAATGCTATTGAAGAGATGCTCAAGTCCTCCAAAGTCGAAAAGCTAGTGATATCTGCCATCCCGGACTTAGTTGAGACATGGACAGAAAGGTTTGGTTTTTTACCCTTGGAAGCCGATGAGAAGAAGAGCCTGGAAAAAAGCAACCTCATGGTGTTCCCAGGAACAGTATGGCTCAAGAAGCTCATGAATCAGGATTCAACCCAGGGCAATCACCTTCTTGATGTACCCCACTGCTCTCAAAGGACCTTTGGTGGAGGTGGCGAAACAGATTGGTCAGGTAATTGTTCAGTATGTATAATTATGTAA 945 43.49 MLLFLQELPEGSYYCLKCCCGSCGNVVRHKEARVSNSLKCLQCEHKYHKRCTKGKGIKKKLVGSTWFCGETCEKIHSDLDSRIGRVNPISDGFSWTLLKCIHGDERVNSAQDYVALKAECNLKLAVALTIMEECFVPMVDTRTGIHMLPHVLYNWGSEYVRLNYEGFYTIVLEKDDILLCVASLRIHGATVAEMPLIATCSRHRRQGMCRRLMNAIEEMLKSSKVEKLVISAIPDLVETWTERFGFLPLEADEKKSLEKSNLMVFPGTVWLKKLMNQDSTQGNHLLDVPHCSQRTFGGGGETDWSGNCSVCIIM 314
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g04057 314 PANTHER PHD FINGER PROTEIN 12 4 281 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Cind3g04057 314 Pfam Acetyltransferase (GNAT) family 163 230 IPR000182 GO:0016747(InterPro)
Cind3g04057 314 CDD NAT-SF 170 231 - -
Cind3g04057 314 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 126 276 IPR000182 GO:0016747(InterPro)
Cind3g04057 314 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 165 250 IPR016181 -
Cind3g04057 314 Gene3D - 134 265 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g04057 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
67430 Cind1g05482 Cind3g04057
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:364258559 Cind3g04057 Cind-Chr3:326558847 dispersed
Cind Cind-Chr3:326558847 Cind8g03192 Cind-Chr8:198776143 dispersed
Cind Cind-Chr3:326558847 Cind8g00199 Cind-Chr8:254355489 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00043 . 615 661 PHD Transcription Factor family AT5G22260 44.681 1.71e-06 50.1
Cind1g00890 . 531 973 PHD Transcription Factor family AT2G36720 40.222 7.09e-109 344.0
Cind1g00892 . 520 985 PHD Transcription Factor family AT2G36720 39.066 4.91e-101 322.0
Cind1g01108 . 614 662 PHD Transcription Factor family AT5G22260 51.02 9.65e-13 68.2
Cind1g01692 . 702 787 PHD Transcription Factor family AT4G14920 30.851 1.57e-09 58.2
Cind1g01698 . 872 923 PHD Transcription Factor family AT1G05380 42.308 1.03e-06 46.6
Cind1g02021 . 1542 1706 PHD Transcription Factor family AT5G35210 84.848 7.31e-86 289.0
Cind1g02150 . 756 830 PHD Transcription Factor family AT2G36720 42.667 3.22e-12 66.6
Cind1g02579 . 320 404 PHD Transcription Factor family AT5G22260 40.0 1.93e-06 49.7
Cind1g03632 . 1546 1704 PHD Transcription Factor family AT5G35210 28.655 1.17e-12 69.7
Cind1g05482 ACH 540 1027 PHD Transcription Factor family AT3G14980 54.286 0.0 550.0
Cind1g06617 . 1546 1704 PHD Transcription Factor family AT5G35210 28.655 6.25e-12 67.0
Cind1g06754 . 27 160 PHD Transcription Factor family AT5G58610 27.536 1.87e-09 57.4
Cind1g07145 . 615 661 PHD Transcription Factor family AT5G22260 44.681 1.75e-06 50.1
Cind2g00054 . 26 159 PHD Transcription Factor family AT5G58610 28.676 4.35e-07 50.4
Cind2g00557 . 685 753 PHD Transcription Factor family AT4G14920 37.838 7.19e-07 52.4
Cind2g01513 ACH 720 801 PHD Transcription Factor family AT3G14980 31.858 4.68e-07 52.4
Cind2g01519 . 720 807 PHD Transcription Factor family AT3G14980 31.858 3.99e-07 48.1
Cind2g01377 . 29 167 PHD Transcription Factor family AT5G58610 26.619 3.69e-08 48.9
Cind2g02840 . 126 387 PHD Transcription Factor family AT5G22260 56.489 1.68e-103 314.0
Cind2g02895 . 326 662 PHD Transcription Factor family AT5G22260 29.191 6.96e-38 148.0
Cind2g03425 . 540 975 PHD Transcription Factor family AT5G58610 37.607 7.65e-88 293.0
Cind2g03426 . 805 932 PHD Transcription Factor family AT5G58610 51.562 2.97e-40 141.0
Cind2g03428 . 365 975 PHD Transcription Factor family AT5G58610 32.253 3.67e-90 299.0
Cind2g03430 . 351 975 PHD Transcription Factor family AT5G58610 33.383 1.78e-98 323.0
Cind2g03473 ACH 262 945 PHD Transcription Factor family AT2G36720 45.755 0.0 616.0
Cind3g00462 . 76 215 PHD Transcription Factor family AT3G24440 63.571 4.24e-54 177.0
Cind3g00771 . 867 937 PHD Transcription Factor family AT1G05380 35.211 4.31e-06 46.2
Cind3g00806 ACH 3 317 PHD Transcription Factor family AT4G30200 52.366 1.07e-100 316.0
Cind3g01317 . 676 716 PHD Transcription Factor family AT4G14920 61.905 3.43e-11 60.1
Cind3g02359 . 817 923 PHD Transcription Factor family AT1G05380 54.206 3.08e-34 123.0
Cind3g02824 . 611 654 PHD Transcription Factor family AT5G12400 41.304 3.58e-07 48.9
Cind3g03419 ACH 523 925 PHD Transcription Factor family AT1G05380 50.356 5.22e-137 436.0
Cind3g03478 . 691 895 PHD Transcription Factor family AT2G36720 55.814 8.14e-79 253.0
Cind3g03881 . 419 544 PHD Transcription Factor family AT3G24440 33.577 1.09e-11 59.3
Cind3g04057 ACH 753 1050 PHD Transcription Factor family AT3G14980 55.15 4.23e-110 343.0
Cind3g04058 . 541 751 PHD Transcription Factor family AT3G14980 45.175 1.31e-52 192.0
Cind3g04538 . 10 974 PHD Transcription Factor family AT5G58610 36.52 0.0 623.0
Cind3g04926 . 45 597 PHD Transcription Factor family AT3G24440 48.18 4.83e-171 498.0
Cind3g05290 . 130 261 PHD Transcription Factor family AT3G14980 29.787 1.18e-08 50.4
Cind3g05698 ACH 827 943 PHD Transcription Factor family AT3G14980 56.78 3.55e-38 135.0
Cind3g05801 . 228 984 PHD Transcription Factor family AT4G14920 46.631 0.0 654.0
Cind3g05807 . 784 945 PHD Transcription Factor family AT2G36720 55.828 1.09e-57 192.0
Cind3g05916 . 747 945 PHD Transcription Factor family AT2G36720 51.5 1.56e-66 221.0
Cind4g00031 . 684 760 PHD Transcription Factor family AT4G14920 35.366 1.73e-07 54.3
Cind4g00049 . 684 760 PHD Transcription Factor family AT4G14920 35.366 1.65e-07 54.3
Cind4g01591 . 680 744 PHD Transcription Factor family AT2G36720 48.649 1.84e-16 74.7
Cind4g01893 . 869 916 PHD Transcription Factor family AT1G05380 52.083 5.18e-11 55.1
Cind4g02488 . 36 211 PHD Transcription Factor family AT5G57380 42.13 4.40e-46 167.0
Cind4g03311 . 71 217 PHD Transcription Factor family AT3G24440 49.664 1.42e-34 127.0
Cind4g05222 . 657 753 PHD Transcription Factor family AT1G05380 34.314 8.19e-08 49.3
Cind5g00609 . 862 928 PHD Transcription Factor family AT1G05380 64.179 2.67e-21 94.7
Cind5g02522 . 130 217 PHD Transcription Factor family AT5G57380 30.097 5.22e-08 53.5
Cind5g02626 . 172 254 PHD Transcription Factor family AT3G53680 60.241 9.53e-26 109.0
Cind5g04537 . 253 977 PHD Transcription Factor family AT2G36720 39.406 1.59e-175 541.0
Cind5g04372 . 744 951 PHD Transcription Factor family AT2G36720 44.019 6.79e-54 185.0
Cind5g04721 ACH 81 663 PHD Transcription Factor family AT5G22260 31.169 1.77e-81 271.0
Cind5g05130 . 44 1536 PHD Transcription Factor family AT5G35210 39.789 0.0 1097.0
Cind5g05264 . 282 490 PHD Transcription Factor family AT3G14980 28.91 3.38e-17 78.6
Cind6g00941 . 690 975 PHD Transcription Factor family AT5G58610 47.436 1.31e-84 285.0
Cind6g01135 . 130 184 PHD Transcription Factor family AT5G57380 35.385 3.09e-07 52.8
Cind6g02705 . 172 301 PHD Transcription Factor family AT3G53680 54.615 6.55e-40 150.0
Cind6g02932 . 611 656 PHD Transcription Factor family AT5G12400 39.583 6.62e-06 47.8
Cind6g03121 . 367 847 PHD Transcription Factor family AT4G14920 34.381 5.49e-85 299.0
Cind6g03698 . 827 933 PHD Transcription Factor family AT3G14980 59.259 3.14e-36 130.0
Cind7g02515 . 675 759 PHD Transcription Factor family AT4G14920 35.556 9.19e-07 51.6
Cind7g03131 . 41 831 PHD Transcription Factor family AT3G53680 54.115 0.0 809.0
Cind7g05425 . 365 975 PHD Transcription Factor family AT5G58610 34.211 8.85e-97 318.0
Cind8g00058 . 365 932 PHD Transcription Factor family AT5G58610 31.641 5.88e-69 239.0
Cind8g00199 . 7 1032 PHD Transcription Factor family AT3G14980 42.007 0.0 764.0
Cind8g00394 . 365 975 PHD Transcription Factor family AT5G58610 34.158 2.47e-94 312.0
Cind8g00836 . 681 714 PHD Transcription Factor family AT4G14920 64.706 2.49e-11 57.8
Cind8g00837 ACH 817 923 PHD Transcription Factor family AT1G05380 54.206 2.21e-31 123.0
Cind8g01615 . 145 261 PHD Transcription Factor family AT5G57380 31.783 5.17e-09 56.6
Cind8g01753 . 221 928 PHD Transcription Factor family AT4G14920 46.803 0.0 627.0
Cind8g01907 . 554 973 PHD Transcription Factor family AT5G58610 44.866 7.75e-123 397.0
Cind8g01969 . 869 928 PHD Transcription Factor family AT1G05380 61.667 8.03e-21 83.6
Cind8g03192 . 223 984 PHD Transcription Factor family AT4G14920 48.645 0.0 705.0
Cind8g04059 ACH 1 685 PHD Transcription Factor family AT4G30200 44.269 2.71e-171 503.0
Cind9g00308 . 39 264 PHD Transcription Factor family AT5G57380 22.581 9.26e-10 59.7
Cind9g00836 . 674 753 PHD Transcription Factor family AT4G14920 36.047 3.73e-07 53.1
Cind9g02419 . 652 887 PHD Transcription Factor family AT1G05380 57.741 1.05e-89 287.0
Cind9g03291 . 676 760 PHD Transcription Factor family AT4G14920 35.556 6.13e-07 52.4
Cind9g03704 . 302 1595 PHD Transcription Factor family AT5G12400 40.015 0.0 885.0
Cind9g03951 . 212 667 PHD Transcription Factor family AT5G22260 33.747 1.22e-69 232.0