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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g04192 ATGCACCTTCTAATTCTTCCTACTCCAACTCTTTGCTCTTACTCACACCACCCTTCTCTGCCGCACCGCCACCTCAGCTTCCGCACATCTCACCACCAAAACTTACGTTACCTTAAAACCCTCGGTATCATCAAACCGGGGTCCGAAAAAAGTCCCTCACCCGAATCACTCTCTCATATACTCTCAACTGTAAACTACCTTAAAACCAAAGGGTTTTCAGAACCGGATATTCCACGTATCGCCTTTCTATCTCCAACTACATTCACCCCGTCTTTCGACCCTCTCACCATTGAGCCTGTTTTCGAGTTCTTAACATTTGAATTATCCGCCTCATTGGAAGAGGCATGTGGGTTAATCCTAAAATGCCCTCATATCCTCGAGTCAGACGTGGAATACTGTCTAAAACCAACACTTGAGTACCTTAAATATTTAGGTATTAGGCAGTTAAATAAACCAACAACTTTAAATGCTCATTTATTAGATACCAGAGTGGAAAAACTAGAAGAGAAAATGAGGTTTTTACGAGGCGCTGGGTTTTCGAGTGAGGAGTCAAGAAGGGTGTGTGGGCGTTTTCCCGCGATATTTGGGTATGGTGTGGAGCATAACTTGAGGCCGAAATTTGAGTACTTGGTTAAGGTAATGAAAAGGAATGGTATAGAGGAAGTAAACAAGTTTCCACAATATTTCGGGTTTAGTTTGCAGAAAAGAATCAAGCCAAGATATTTGCATTTGAAACTAAGGAATGTTGATGGTGAGATACCATTGAATAGAATGTTGTTGTGGAGTGACCAAAGGTTTTTCAAGAAATGGAAATGA 816 41.54 MHLLILPTPTLCSYSHHPSLPHRHLSFRTSHHQNLRYLKTLGIIKPGSEKSPSPESLSHILSTVNYLKTKGFSEPDIPRIAFLSPTTFTPSFDPLTIEPVFEFLTFELSASLEEACGLILKCPHILESDVEYCLKPTLEYLKYLGIRQLNKPTTLNAHLLDTRVEKLEEKMRFLRGAGFSSEESRRVCGRFPAIFGYGVEHNLRPKFEYLVKVMKRNGIEEVNKFPQYFGFSLQKRIKPRYLHLKLRNVDGEIPLNRMLLWSDQRFFKKWK 271
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g04192 271 SMART mt-12 78 111 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 SMART mt-12 116 147 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 SMART mt-12 150 180 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 SMART mt-12 219 250 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 SMART mt-12 185 217 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 Pfam mTERF 59 147 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 Pfam mTERF 97 266 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cind3g04192 271 Gene3D Transcription termination factor 3, mitochondrial 30 271 IPR038538 -
Cind3g04192 271 PANTHER CGI-12 PROTEIN-RELATED 57 269 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g04192 K15031 mitochondrial transcription termination factor family protein
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind mTERF 3.3e-33 No_clan TR mTERF