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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g04213 ATGGCTTCTTCTGCCAAGAGTTGTAACATCATCTTCCATGCTCTATTGCTTATACAGTTATGCAGTTCTCGGGCTATCTACGAAAAATCCAAAAACGATCACAACGAAGAAAATCATATAGAAATATTTGGAAAGAACGAACATGGTGATTTGGATCCTGCTCTAAAGGTGTTCTTCCATGTAAAGGACTTATACTCGGGCAAAAACATGTCAATTTATTTTGCGGTTAATGACCCATCAACAACTCCTCGACTACTAGCAAGAGAACAAGCCGATTTGATACCATTCTCCTCATCAAAACTCCCATACCTTCTTGACTTTATCTCCTTAGCCGAGGGTTCGCCACAAGCCATAGCTATGGAGCAAACACTTAAACAATGTGAGCTTGAGCCGGTACCTGGTGAGATCAGGTTTTGCGCTAGCTCCTTAGAGTCCATGCTGGACTCAATACGAGGCATATTAGGTACAGACAAACTGAAGACTTTGACAACCCAAATCCATAATTTGACAAAGCCCAGTTTTACCCTTTTGCAAGGGTATACCTTTTTGAAAGAGCCATTGGAGATTCATGTTCCTGATATGGTGGCTTGTCATACCATGGCTTATCCTTATACAGTTTACTACTGTCATGGTCAAAAGGGAAATAATAGGGTTTTCCAGATTTCTTTAGGGGGTGAGAACGGAAATAGAGTCGATGCTATTGCTGTATGCCACATGGACACATCTATGTGGGATCATGATCACGTGGCGTTTCGTGTACTTGGAGGACACCCTGGCAGCTCGCCGGTGTGCCATTTCCTCCCTGCTGATAACATCGTGTGGATACCATCACAGTAG 837 43.01 MASSAKSCNIIFHALLLIQLCSSRAIYEKSKNDHNEENHIEIFGKNEHGDLDPALKVFFHVKDLYSGKNMSIYFAVNDPSTTPRLLAREQADLIPFSSSKLPYLLDFISLAEGSPQAIAMEQTLKQCELEPVPGEIRFCASSLESMLDSIRGILGTDKLKTLTTQIHNLTKPSFTLLQGYTFLKEPLEIHVPDMVACHTMAYPYTVYYCHGQKGNNRVFQISLGGENGNRVDAIAVCHMDTSMWDHDHVAFRVLGGHPGSSPVCHFLPADNIVWIPSQ 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g04213 278 ProSiteProfiles BURP domain profile. 58 277 IPR004873 -
Cind3g04213 278 Pfam BURP domain 57 275 IPR004873 -
Cind3g04213 278 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 38 277 IPR044816 -
Cind3g04213 278 SMART BURP-2 56 277 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g04213 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:342536887 Cind3g04213 Cind-Chr3:364032050 dispersed
Cind Cind-Chr1:342540117 Cind3g04213 Cind-Chr3:364032050 dispersed
Cind Cind-Chr3:363733159 Cind3g04213 Cind-Chr3:364032050 proximal