AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g04231 ATGGAGCTCAGGTGTATACAATCACCAGTTGTTAGTAGCATACCTACTAACAACAGCAAGCATCAACTAGTACAATGCTACGGTCAGTTTATTCGATCTTTTGGAACGAAAAAAGGTGTTTTTGAAACGAATGGGGCGAAGGTTAAATATGCTCGGTTTAGTGTTCGAGCATCAGCAGCAGTTGGTTCAGTGCCTGCTGAAACAAGAACACAAGATGGCGAAAAAGACGGAGATCCAGTATTTGTTGCAGGAGCAACTGGAAAAGTTGGTTCCCGAACAGTAAGGGAGCTTTTGAAATTAGGATTTAATGTCCGAGCTGGTGTAAGGAGTACTCAAAGAGCAGAATCTCTGGTGAAAAGTGTGCAGCAGATAAAGCTTGATGACGGAAGTCAGCCTATAGAGAAGCTTCAGCTAGTGGAGTGTGACTTGGAGAAACCGGAGCAGATTAAGGCGGCATTGGGCAGTGCTTCAACAGTTATATGCTGCATTGGAGCGAGTGAGAAGGAGATATTTGATGTCACTGGACCATACCGAATTGACTTTCTAGCCACAAAAAACCTCATTGATGCAGCTGCTGCTGCAAAAGCGAAACACTTTATTCTGGTTACTTCTTTGGGAACAAACAAGTTTGGATTTCCTGCTGCTGTATTGAATTTGTTCTGGGGAGTCCTATGCTGGAAAAGGAAGGCTGAAGAAGCACTTCTGGCTAGTGGAATTCCTTACACTATAGTGAGACCTGGAGGTATGGAGCGTCCTACAGACTCTTTCAAGGAAACACATAATCTTACTCTCGCTACAGAAGATACTTTATTTGGTGGTCTTGTATCAAATTTACAGGTGGCAGAACTCCTTGCATTTATGGCTAAAAACCCAACTCTCTCATATTGTAAAGTACTGGAAGTAGTTGCCGAAACAACAGCACCATTGACCCCCTTTGGGGACCTTTTAACAAAAATACCATCTAAACGTGCTGTACCTTTACAGCCCAAGGAACCTGAAGCTACCAAAGAACCTGCACCTGCACCTGTTCCTGAAACTGAAATCATTGCCACTGAAACGCCATCCGAGTCTAAACCAGTTGCCACGCGACCACTGTCCCCGTACACAGCTTATGAAAACTTGAAGCCACCAACATCTCCAATCCCGACACCAAGTGGATACCAAAAGAAACCAGAAGTTGCACCAGAAGCTGTACCAAAAGTTGCAACATCAGAAGTTGCACCAGAAGCTGTACCAGCAGCTACGACAGCCGTTGACACTGTTACAAAGATTGAAGACGTAAGTGATGTCAAAGAGGATCCTACTCAAGTTGTGACATCCAACAGCAGGTCCCCTTACTATGTATATGAGACTCTGAAGCCTCCTATGTCGCCAACTCCAAGTCCTCCATCGGTATCACCACCACCAATCGTCCCTGTCGACAACGGGTCCCCCATTGCTTCCACACCAGAAAGCACCTCAGCTCAATCTACAGTGAAGCCAAGACCACTTTCACCTTACTCCATGTACGAAAGTTTGAAGCCTCCAAGTTCTCCTACTCCTTCCAAACCCCATTAA 1557 45.15 MELRCIQSPVVSSIPTNNSKHQLVQCYGQFIRSFGTKKGVFETNGAKVKYARFSVRASAAVGSVPAETRTQDGEKDGDPVFVAGATGKVGSRTVRELLKLGFNVRAGVRSTQRAESLVKSVQQIKLDDGSQPIEKLQLVECDLEKPEQIKAALGSASTVICCIGASEKEIFDVTGPYRIDFLATKNLIDAAAAAKAKHFILVTSLGTNKFGFPAAVLNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDSFKETHNLTLATEDTLFGGLVSNLQVAELLAFMAKNPTLSYCKVLEVVAETTAPLTPFGDLLTKIPSKRAVPLQPKEPEATKEPAPAPVPETEIIATETPSESKPVATRPLSPYTAYENLKPPTSPIPTPSGYQKKPEVAPEAVPKVATSEVAPEAVPAATTAVDTVTKIEDVSDVKEDPTQVVTSNSRSPYYVYETLKPPMSPTPSPPSVSPPPIVPVDNGSPIASTPESTSAQSTVKPRPLSPYSMYESLKPPSSPTPSKPH 518
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g04231 518 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 318 IPR036291 -
Cind3g04231 518 MobiDBLite consensus disorder prediction 370 410 - -
Cind3g04231 518 Gene3D - 78 322 - -
Cind3g04231 518 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 466 IPR044719 -
Cind3g04231 518 Pfam NAD(P)H-binding 84 291 IPR016040 -
Cind3g04231 518 MobiDBLite consensus disorder prediction 455 474 - -
Cind3g04231 518 MobiDBLite consensus disorder prediction 433 447 - -
Cind3g04231 518 CDD SDR-a5 79 305 - -
Cind3g04231 518 MobiDBLite consensus disorder prediction 478 496 - -
Cind3g04231 518 MobiDBLite consensus disorder prediction 427 518 - -
Cind3g04231 518 FunFam Protein TIC 62, chloroplastic 76 322 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g04231 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:268662580 Cind3g04231 Cind-Chr3:364306349 dispersed
Cind Cind-Chr3:364306349 Cind5g04338 Cind-Chr5:106480844 dispersed
Cind Cind-Chr4:175365293 Cind3g04231 Cind-Chr3:364306349 dispersed