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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g04266 ATGTTTGATGTGTATGGTTTTTTAGCAATTGTTGCATTAAAAGAGGCATCAAATGTGTTAAAGAAGTCGTTGCATGTTGATGATCAGCCAGTACTTGAAGAATTTATACCACTCAAGAATAGTTGTGATCATGATGATGCAAAAGTAGAAATTGTTGCAAATGAAAATGATAATGGTGATAAGAAGAATTGGTTGAGGTCTACACATCTTTGGAACACTAATGAGAACCTTGAGACAGTGGAAGAAAAAGAGGAAATGAGAGCGGTTTTTAGCCCCGAAATCAAGAATCTAATGAAGGGAAATGGTTTGCTTACTGAAATCAATGGTGATAGTAAATTGATTCAATGTTCTACGCCAAATGTGCAAAAAAACGCGCGAATTGGTGGGATTGTCCCTTTGCCTTCACAACAACAGACATCTAGGAAGCAAAGGAGATGTTGGTCAACCGAGCTGCATAGACGATTTGTCAATGCGTTGGAAGAACTTGGAGGATCACAAGTAGCCACGCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTCACCAATGACGAAGTGAAAAGCCATTTACAAAAATATAGACTTCATACGCGAAGGCTTCCATCTTCAAATACAAATCAATCTAGTCTCGCTGTAGGAGGAGGATTATGTATGTCCAAAGGCGGCAATTCTCAATCAGGGTCTCCGGATGGGCCTCTCACGAACGGTGAAAACAACATGGATGATGAAGAAGAAGAGAAATCCGAGAATTATTGTTGGAATCCTTAA 771 39.69 MFDVYGFLAIVALKEASNVLKKSLHVDDQPVLEEFIPLKNSCDHDDAKVEIVANENDNGDKKNWLRSTHLWNTNENLETVEEKEEMRAVFSPEIKNLMKGNGLLTEINGDSKLIQCSTPNVQKNARIGGIVPLPSQQQTSRKQRRCWSTELHRRFVNALEELGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSSNTNQSSLAVGGGLCMSKGGNSQSGSPDGPLTNGENNMDDEEEEKSENYCWNP 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g04266 256 FunFam Myb family transcription factor 141 199 - -
Cind3g04266 256 MobiDBLite consensus disorder prediction 197 256 - -
Cind3g04266 256 Gene3D - 141 199 - -
Cind3g04266 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 252 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cind3g04266 256 SUPERFAMILY Homeodomain-like 139 200 IPR009057 -
Cind3g04266 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 199 IPR017930 -
Cind3g04266 256 MobiDBLite consensus disorder prediction 198 236 - -
Cind3g04266 256 Pfam Myb-like DNA-binding domain 144 195 IPR001005 -
Cind3g04266 256 NCBIfam myb-like DNA-binding domain, SHAQKYF class 142 197 IPR006447 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g04266 K28176 GARP family transcription factor, NIGT1 subfamily
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:365637831 Cind6g02853 Cind-Chr6:67750752 dispersed
Cind Cind-Chr3:365637831 Cind8g02464 Cind-Chr8:235035404 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00946 . 14 68 G2-like Transcription Factor family AT3G24120 62.5 5.92e-17 71.6
Cind1g06942 . 239 326 G2-like Transcription Factor family AT1G32240 60.606 1.10e-26 100.0
Cind1g07119 ACH 211 263 G2-like Transcription Factor family AT1G32240 100.0 4.12e-32 113.0
Cind1g07571 . 14 163 G2-like Transcription Factor family AT3G12730 71.333 1.45e-71 223.0
Cind2g00152 . 321 374 G2-like Transcription Factor family AT4G28610 68.852 2.42e-17 75.9
Cind2g02306 . 1 289 G2-like Transcription Factor family AT3G24120 64.189 6.35e-129 366.0
Cind2g02941 . 2 311 G2-like Transcription Factor family AT1G25550 43.155 1.23e-72 228.0
Cind2g02963 . 15 146 G2-like Transcription Factor family AT2G01060 56.061 5.58e-49 162.0
Cind2g04432 . 1 79 G2-like Transcription Factor family AT1G14600 70.886 8.44e-33 119.0
Cind2g04454 . 227 324 G2-like Transcription Factor family AT1G49560 39.394 3.33e-07 44.7
Cind2g05468 . 14 187 G2-like Transcription Factor family AT3G12730 42.857 4.23e-38 131.0
Cind3g01633 . 9 222 G2-like Transcription Factor family AT2G01060 71.163 6.39e-97 285.0
Cind3g02594 . 168 324 G2-like Transcription Factor family AT5G06800 59.146 5.41e-55 181.0
Cind3g04266 . 82 267 G2-like Transcription Factor family AT1G25550 43.814 2.24e-42 145.0
Cind3g04599 . 257 287 G2-like Transcription Factor family AT4G28610 87.097 1.71e-12 58.9
Cind4g00094 . 114 341 G2-like Transcription Factor family AT5G29000 55.508 6.44e-73 232.0
Cind4g01004 . 72 196 G2-like Transcription Factor family AT2G40260 60.0 2.43e-44 151.0
Cind4g04935 ACH 2 255 G2-like Transcription Factor family AT5G42630 41.888 5.05e-52 171.0
Cind5g00185 ACH 176 388 G2-like Transcription Factor family AT1G32240 53.744 6.37e-54 176.0
Cind5g01486 . 1 270 G2-like Transcription Factor family AT4G13640 61.852 5.15e-112 322.0
Cind5g04992 . 3 387 G2-like Transcription Factor family AT3G04030 55.216 5.00e-120 350.0
Cind6g00456 . 7 141 G2-like Transcription Factor family AT2G01060 57.353 4.37e-52 169.0
Cind6g02661 . 56 376 G2-like Transcription Factor family AT4G28610 49.267 1.96e-89 275.0
Cind6g02853 . 2 311 G2-like Transcription Factor family AT1G25550 50.581 1.17e-99 298.0
Cind6g03035 . 178 229 G2-like Transcription Factor family AT3G46640 82.692 2.27e-23 89.7
Cind6g02612 . 42 156 G2-like Transcription Factor family AT2G42660 52.991 3.68e-32 120.0
Cind7g01712 . 17 401 G2-like Transcription Factor family AT5G18240 47.595 8.44e-106 313.0
Cind7g05286 . 49 172 G2-like Transcription Factor family AT2G40260 62.903 3.62e-44 155.0
Cind8g00596 . 1 374 G2-like Transcription Factor family AT4G28610 47.631 5.85e-96 292.0
Cind8g01879 . 46 174 G2-like Transcription Factor family AT2G40260 55.0 7.71e-36 132.0
Cind8g02176 . 1 335 G2-like Transcription Factor family AT3G10760 50.291 6.93e-80 242.0
Cind8g02188 . 1 214 G2-like Transcription Factor family AT3G46640 49.083 5.68e-58 186.0
Cind8g02464 . 6 317 G2-like Transcription Factor family AT2G03500 37.725 1.11e-57 192.0
Cind8g02875 . 1 214 G2-like Transcription Factor family AT3G46640 50.0 5.49e-60 191.0
Cind8g02898 . 172 324 G2-like Transcription Factor family AT5G06800 66.452 1.02e-65 211.0
Cind8g03280 . 1 335 G2-like Transcription Factor family AT3G10760 51.163 6.29e-81 244.0
Cind9g00229 . 270 334 G2-like Transcription Factor family AT5G16560 47.945 1.32e-07 44.7
Cind9g00239 . 270 334 G2-like Transcription Factor family AT5G16560 45.333 2.24e-08 47.0
Cind9g01623 ACH 176 387 G2-like Transcription Factor family AT1G32240 62.162 4.85e-70 223.0
Cind9g01673 . 1 245 G2-like Transcription Factor family AT5G45580 52.941 1.20e-74 227.0
Cind9g01789 . 36 417 G2-like Transcription Factor family AT2G20570 46.766 1.15e-87 270.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind Myb_DNA-binding 3.9e-07 CL0123 TF GARP-G2-like