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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g04360 ATGATGCAAAATCTGTCATGTGAAAAGAAGAAAAAAAGGAAGAGGGTGGTACCTAAAGAGGCTAAAGATAAACAGATTATGTCAGATAAACCCAAAAAGGCTTCGGGTAAGGGAAAAAGAACGAAATTGTGTGATATATATAACAATCCAGAAGATCAATATATGTGTATGGAACGAGCAGCCACCGTATTGGAAACTCTAGATGAAGAGTTACCTAAGTTTGGAAAATGTATGCTCCCGTCAAATGTTCTCTACAGTTTTTGGTTGATTTTACCGAGTAAATTCTGTGTCAATCATTTGCCTGAGCACGATACGACAATTATTCTTGTGGATGAGTCGGGAAAAGAGTTTAAGACAAATTATCTCAAAGTAAGGCACGGTTTAAGTGCCGGATGGAGGGGATTTACCGTTGCACAAAGGTTACTTCAGGGCGACATTCTGTTTTTCCGTCTCATTGAACCCTGCAAACTACAGGTGAACATAGTAAGACGATATGATCTAGAAGCCATAGAAGCAGCTGATTGTTTAATGGAAATGCATCCCCGTGCTAAAAAAGTGAGGGTGTCAAATTACTTTGACTCGGATAAAGCGGGAGAACCTAAAAAAGAAAGACGCAAGTGGAAAAAAGTCAAGGAGGAAATTGAAGATGAATTCAAGCATCAAACCCCGGTTCCTGTACCAACGACAAAAGGCAAGCGAACTAAAAGAAGCCCAAAAAAGTGCATAGCAAGGTTCTCGTTAGATTTTTGTTCAAATCGAGGGGTGACCAATGAAGAAGATGCTGAAAGAGTTTCGTGTGCGGACCAATGTGGAAATAGTAGTGATGGGTTGGGCTCAGAAGTACTTCAAGGCTCGACATCAGAGATGACCAATCAATCACAAGCCGAGGAGGACGGGTGCTACAAACTGAATCTGGGCTGCCATGAATCGACTGCTGAGAGAATATATCATTCCTCTACAGTTACAACATAA 972 40.95 MMQNLSCEKKKKRKRVVPKEAKDKQIMSDKPKKASGKGKRTKLCDIYNNPEDQYMCMERAATVLETLDEELPKFGKCMLPSNVLYSFWLILPSKFCVNHLPEHDTTIILVDESGKEFKTNYLKVRHGLSAGWRGFTVAQRLLQGDILFFRLIEPCKLQVNIVRRYDLEAIEAADCLMEMHPRAKKVRVSNYFDSDKAGEPKKERRKWKKVKEEIEDEFKHQTPVPVPTTKGKRTKRSPKKCIARFSLDFCSNRGVTNEEDAERVSCADQCGNSSDGLGSEVLQGSTSEMTNQSQAEEDGCYKLNLGCHESTAERIYHSSTVTT 323
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g04360 323 Gene3D - 55 167 IPR015300 -
Cind3g04360 323 CDD B3-DNA 72 163 IPR003340 GO:0003677(InterPro)
Cind3g04360 323 SMART B3-2 74 165 IPR003340 GO:0003677(InterPro)
Cind3g04360 323 MobiDBLite consensus disorder prediction 19 38 - -
Cind3g04360 323 ProSiteProfiles B3 DNA-binding domain profile. 74 165 IPR003340 GO:0003677(InterPro)
Cind3g04360 323 MobiDBLite consensus disorder prediction 1 38 - -
Cind3g04360 323 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 165 IPR044837 -
Cind3g04360 323 Pfam B3 DNA binding domain 74 164 IPR003340 GO:0003677(InterPro)
Cind3g04360 323 SUPERFAMILY DNA-binding pseudobarrel domain 68 163 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g04360 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr9:121304320 Cind3g04360 Cind-Chr3:370662584 dispersed
Cind Cind-Chr3:370662584 Cind3g04362 Cind-Chr3:370731915 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g01881 . 1 429 B3 DNA Binding Superfamily AT5G62000 77.083 0.0 701.0
Cind1g02174 . 13 669 B3 DNA Binding Superfamily AT4G30080 55.507 0.0 689.0
Cind1g02798 . 1 229 B3 DNA Binding Superfamily AT3G19184 42.918 1.91e-42 143.0
Cind1g02799 . 98 208 B3 DNA Binding Superfamily AT3G19184 55.856 2.87e-35 121.0
Cind1g02800 . 16 229 B3 DNA Binding Superfamily AT3G19184 53.604 6.16e-68 208.0
Cind1g03888 . 14 591 B3 DNA Binding Superfamily AT2G46530 59.758 0.0 685.0
Cind1g03717 . 5 135 B3 DNA Binding Superfamily AT1G59750 54.962 1.58e-35 133.0
Cind1g04214 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.308 5.29e-14 68.6
Cind1g04215 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.308 8.09e-15 70.9
Cind1g05367 . 1 668 B3 DNA Binding Superfamily AT4G30080 52.984 0.0 641.0
Cind1g05627 . 286 376 B3 DNA Binding Superfamily AT2G30470 49.462 5.98e-20 82.4
Cind1g05628 . 292 376 B3 DNA Binding Superfamily AT2G30470 51.724 1.09e-19 82.4
Cind1g05629 . 279 385 B3 DNA Binding Superfamily AT4G32010 41.667 2.64e-24 96.3
Cind1g05630 . 28 119 B3 DNA Binding Superfamily AT4G21550 43.478 4.96e-19 87.0
Cind1g05631 . 33 118 B3 DNA Binding Superfamily AT4G21550 46.512 4.00e-21 95.9
Cind1g05632 . 31 103 B3 DNA Binding Superfamily AT4G21550 50.685 3.92e-21 89.7
Cind1g05633 . 282 385 B3 DNA Binding Superfamily AT4G32010 43.81 5.90e-23 93.6
Cind1g06503 . 337 371 B3 DNA Binding Superfamily AT2G28350 54.286 3.17e-07 43.5
Cind1g07690 . 167 289 B3 DNA Binding Superfamily AT1G05930 33.846 6.43e-11 59.7
Cind1g07695 . 167 289 B3 DNA Binding Superfamily AT1G05930 35.385 1.71e-12 64.3
Cind2g00696 . 321 407 B3 DNA Binding Superfamily AT4G21550 41.111 1.25e-14 68.9
Cind2g00710 . 321 381 B3 DNA Binding Superfamily AT4G21550 45.312 7.41e-13 60.5
Cind2g01914 . 736 811 B3 DNA Binding Superfamily AT1G19850 41.772 6.27e-09 48.9
Cind2g02019 . 53 850 B3 DNA Binding Superfamily AT5G62000 60.394 0.0 946.0
Cind2g03361 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.091 0.0 701.0
Cind2g03400 . 4 693 B3 DNA Binding Superfamily AT2G28350 56.259 0.0 665.0
Cind2g03616 . 11 109 B3 DNA Binding Superfamily AT5G66980 35.644 9.30e-09 50.4
Cind2g06200 . 33 112 B3 DNA Binding Superfamily AT4G21550 52.5 1.34e-27 106.0
Cind2g06204 . 4 136 B3 DNA Binding Superfamily AT5G66980 35.821 7.15e-21 85.1
Cind2g06205 . 4 103 B3 DNA Binding Superfamily AT5G66980 42.574 4.06e-20 81.3
Cind3g00193 . 2 639 B3 DNA Binding Superfamily AT1G59750 67.688 0.0 872.0
Cind3g00204 . 411 583 B3 DNA Binding Superfamily AT1G59750 49.425 2.71e-41 145.0
Cind3g00205 . 2 227 B3 DNA Binding Superfamily AT1G59750 66.667 6.95e-107 322.0
Cind3g00786 . 113 256 B3 DNA Binding Superfamily AT3G19184 46.528 3.29e-35 130.0
Cind3g00930 . 233 297 B3 DNA Binding Superfamily AT4G23980 81.538 5.27e-33 117.0
Cind3g01059 . 217 660 B3 DNA Binding Superfamily AT4G32010 37.389 1.88e-79 270.0
Cind3g02466 . 1 590 B3 DNA Binding Superfamily AT2G33860 49.423 0.0 530.0
Cind3g02652 . 1 464 B3 DNA Binding Superfamily AT1G30330 88.034 0.0 838.0
Cind3g04316 . 509 546 B3 DNA Binding Superfamily AT1G59750 68.421 1.53e-07 48.5
Cind3g04353 . 87 205 B3 DNA Binding Superfamily AT5G42700 54.622 5.17e-40 141.0
Cind3g04360 . 35 199 B3 DNA Binding Superfamily AT5G42700 36.145 6.23e-28 106.0
Cind3g04362 . 114 158 B3 DNA Binding Superfamily AT5G42700 51.111 9.86e-10 52.0
Cind3g04489 . 115 237 B3 DNA Binding Superfamily AT4G30080 70.732 6.54e-56 183.0
Cind3g04705 . 20 492 B3 DNA Binding Superfamily AT1G19220 62.241 0.0 575.0
Cind3g05184 . 15 145 B3 DNA Binding Superfamily AT1G59750 51.145 1.38e-33 124.0
Cind3g05188 . 2 639 B3 DNA Binding Superfamily AT1G59750 62.328 0.0 775.0
Cind3g05686 . 27 145 B3 DNA Binding Superfamily AT1G59750 56.303 8.70e-37 135.0
Cind3g05687 . 15 145 B3 DNA Binding Superfamily AT1G59750 51.145 1.38e-33 124.0
Cind3g05688 . 267 639 B3 DNA Binding Superfamily AT1G59750 49.868 8.63e-100 310.0
Cind3g05789 . 509 546 B3 DNA Binding Superfamily AT1G59750 68.421 7.07e-07 48.1
Cind4g00409 ACH 35 199 B3 DNA Binding Superfamily AT5G42700 38.286 1.03e-34 119.0
Cind4g00411 . 92 152 B3 DNA Binding Superfamily AT5G42700 41.791 1.28e-10 57.4
Cind4g00412 . 112 243 B3 DNA Binding Superfamily AT3G19184 39.568 3.15e-24 99.8
Cind4g00414 . 115 152 B3 DNA Binding Superfamily AT3G19184 57.895 3.93e-10 55.5
Cind4g00226 . 115 284 B3 DNA Binding Superfamily AT4G30080 57.778 3.32e-58 192.0
Cind4g01593 . 88 213 B3 DNA Binding Superfamily AT2G28350 71.429 1.39e-58 194.0
Cind4g01645 . 296 333 B3 DNA Binding Superfamily AT1G59750 71.053 2.53e-13 62.4
Cind4g03810 . 148 294 B3 DNA Binding Superfamily AT1G05930 33.117 2.17e-13 68.2
Cind4g04792 . 1 593 B3 DNA Binding Superfamily AT4G30080 50.833 3.96e-178 514.0
Cind4g04806 . 42 91 B3 DNA Binding Superfamily AT4G32010 46.0 2.81e-14 66.2
Cind4g05352 . 225 345 B3 DNA Binding Superfamily AT4G30080 47.328 4.42e-26 100.0
Cind4g05518 . 225 345 B3 DNA Binding Superfamily AT4G30080 47.328 4.42e-26 100.0
Cind4g05729 ACH 16 141 B3 DNA Binding Superfamily AT4G01580 37.984 1.57e-20 87.8
Cind5g00596 . 319 356 B3 DNA Binding Superfamily AT2G30470 63.158 1.19e-14 65.5
Cind5g01041 . 269 332 B3 DNA Binding Superfamily AT1G59750 73.438 3.50e-21 95.5
Cind5g03203 . 13 304 B3 DNA Binding Superfamily AT2G46530 58.163 9.15e-109 324.0
Cind5g03204 . 319 380 B3 DNA Binding Superfamily AT4G23980 53.03 9.45e-11 56.2
Cind5g03205 . 445 613 B3 DNA Binding Superfamily AT4G23980 55.556 3.11e-58 191.0
Cind5g03347 . 173 289 B3 DNA Binding Superfamily AT1G05930 34.711 3.71e-13 66.2
Cind5g05657 . 1 363 B3 DNA Binding Superfamily AT4G30080 50.133 8.89e-103 312.0
Cind6g00010 . 38 307 B3 DNA Binding Superfamily AT3G24650 40.636 7.89e-40 149.0
Cind6g00011 . 431 666 B3 DNA Binding Superfamily AT3G24650 57.43 9.67e-86 272.0
Cind6g00347 . 4 142 B3 DNA Binding Superfamily AT5G66980 37.5 4.16e-24 93.6
Cind6g00641 . 296 333 B3 DNA Binding Superfamily AT1G59750 73.684 7.95e-12 57.4
Cind6g00755 . 273 337 B3 DNA Binding Superfamily AT5G20730 70.769 9.74e-26 98.2
Cind6g02006 . 27 729 B3 DNA Binding Superfamily AT4G32010 46.837 0.0 640.0
Cind6g02032 . 4 217 B3 DNA Binding Superfamily AT5G58280 51.339 3.86e-69 215.0
Cind6g02328 . 4 136 B3 DNA Binding Superfamily AT5G66980 38.06 1.65e-23 92.0
Cind6g02267 . 1 483 B3 DNA Binding Superfamily AT2G33860 51.2 3.03e-161 473.0
Cind6g02789 . 156 289 B3 DNA Binding Superfamily AT1G05930 33.571 6.81e-12 62.8
Cind6g02802 . 171 314 B3 DNA Binding Superfamily AT1G05930 31.579 7.37e-11 58.9
Cind6g02804 . 164 314 B3 DNA Binding Superfamily AT1G05930 31.25 1.63e-11 61.6
Cind6g02846 . 385 538 B3 DNA Binding Superfamily AT5G60450 43.713 5.42e-25 100.0
Cind7g01282 ACH 247 411 B3 DNA Binding Superfamily AT4G30080 55.152 2.17e-52 183.0
Cind7g02351 . 32 900 B3 DNA Binding Superfamily AT1G19850 59.866 0.0 987.0
Cind7g03007 . 2 686 B3 DNA Binding Superfamily AT2G28350 51.816 0.0 649.0
Cind7g03281 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.545 0.0 1021.0
Cind7g04767 ACH 45 197 B3 DNA Binding Superfamily AT3G26790 41.83 1.73e-36 130.0
Cind7g05429 . 65 772 B3 DNA Binding Superfamily AT5G60450 54.255 0.0 739.0
Cind7g05200 . 1 220 B3 DNA Binding Superfamily AT3G19184 43.75 1.36e-40 137.0
Cind8g00468 . 1 495 B3 DNA Binding Superfamily AT5G20730 65.029 0.0 625.0
Cind8g00989 . 122 421 B3 DNA Binding Superfamily AT4G30080 69.079 3.92e-141 412.0
Cind8g01436 . 103 179 B3 DNA Binding Superfamily AT5G62000 70.513 2.94e-32 117.0
Cind8g02062 . 148 294 B3 DNA Binding Superfamily AT1G05930 31.818 7.44e-12 63.5
Cind8g02448 . 6 221 B3 DNA Binding Superfamily AT3G19184 61.364 4.27e-73 239.0
Cind8g03731 . 8 698 B3 DNA Binding Superfamily AT2G30470 45.257 0.0 584.0
Cind9g00127 ACH 107 230 B3 DNA Binding Superfamily AT3G19184 45.968 1.45e-29 115.0
Cind9g01102 . 19 130 B3 DNA Binding Superfamily AT3G18960 29.825 8.12e-11 59.3
Cind9g02171 . 9 616 B3 DNA Binding Superfamily AT4G23980 59.624 0.0 679.0
Cind9g02672 . 9 321 B3 DNA Binding Superfamily AT2G30470 24.934 1.65e-16 82.4
Cind9g02683 . 31 109 B3 DNA Binding Superfamily AT4G21550 41.772 1.96e-13 69.3
Cind9g03649 ACH 3 313 B3 DNA Binding Superfamily AT3G26790 39.49 7.30e-57 185.0
Cind9g04031 . 1 371 B3 DNA Binding Superfamily AT5G37020 84.211 0.0 679.0
Cind9g04032 . 394 801 B3 DNA Binding Superfamily AT5G37020 46.682 7.15e-88 281.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind B3 1.3e-14 CL0405 TF B3