AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g05125 | ATGGAAGACGAACAATGCACCACTCTCTCAAACCAAGGCTCGGACCTCGATTTCAGCTTTACGAGCTCCACTACCAATTCCATCGCCACAACGAGCGCTCGCTCTAGCCTCGCTCGATCGAGTCTAAGCCTCAGCTTTAACGAATCAACTCGAATATCCTCGGTCTCCACCACCACCTCCTCGACTGAAATCCCAAACTACCATAGTCGCCCTCACCGCAAATCTGACCCAAACTGGTCTGCTATCAAAGCTGCTACTAACCTCTCAGCTGATGGGAAACTCCACATACGCCACTTTAAACTCATCCGCCAAGTTGGATCTGGCAACCTAGGCCGAGTATTCCTGTGCAAGCTTCGCGATTACAATCACGCGAATTTTGCATTAAAAGTTGTTGACAACAACTTATTGACCTCCAAAAAGTGGTCACATGTACAAACGGAAGCGCGGATCTTGTCCGCGCTAGACCACCCCTTCCTTCCTACACTTTATGCGCATTTTGAAGCATCTCATTACACGTGCTTCTTAATAGATTATTGCCCTAATGGTGATTTACATTCCTTGCTACGCAAACAACCAAAATATCGTTTTCATATCGACTCTATCCGCTTTTTCGCAGCTGAAGTACTAGTAGCTCTCGAATATCTCCATTCCTTAGGTATTGTTTACCGAGATTTAAAACTCGAGAACATTTTAATACGAGAAGATGGACATATCATGCTATCTGATTTCGACTTATGTTTCAACGCTGATGTTACACCTAAAGTTGATACTTTACAAAAACTTAACGGGACGTTAACTGAGTTCGTGTCCGAACCAACAACCGCGTTTTCGAAGTCGTGCGTTGGTACTCATGAATATTTAGCACCAGAGTTAGTTAACGGTAACGGTCACGGTAACGGTGTAGACTGGTGGGCATTTGGTGTACTAATATACGAGTTATTAAATGGTACTACACCGTTTAGAGGAAATAATAAAGAGTCCACCCTGGGCAATATAGCATCAACAACAAAACAGGTGCATTTCAAAGAAGATGTTACAAATAATACTAGCACGGTGCATATTCAGGATTTGATAACAAAGTTGCTAGTGAAAGATCTTAAAGAGAGGCTAGGATGTGCAAGAGGTGCAACCGATATTAAACAACACCCCTTTTTTAACGGCATTAAGTGGCCTTTAATTCGTAACTATCAACCCCCAGAGGTTAAGGGGTTGATAGTTAAGAAGAGTAGTATTTCACGTGCTAGTCATGCGGGTCGGTGGCCATTGTTGCATAAGAAAAGGCGTTGGTTATGGAAAGGGTTGAATTGTATTTTGTTGAAAAGTAAGGGGTCTAAACGTAACTTGAATGTTAATCAGAATTGTTACCATTATAAACATAGTACGGAGTAG | 1389 | 42.55 | MEDEQCTTLSNQGSDLDFSFTSSTTNSIATTSARSSLARSSLSLSFNESTRISSVSTTTSSTEIPNYHSRPHRKSDPNWSAIKAATNLSADGKLHIRHFKLIRQVGSGNLGRVFLCKLRDYNHANFALKVVDNNLLTSKKWSHVQTEARILSALDHPFLPTLYAHFEASHYTCFLIDYCPNGDLHSLLRKQPKYRFHIDSIRFFAAEVLVALEYLHSLGIVYRDLKLENILIREDGHIMLSDFDLCFNADVTPKVDTLQKLNGTLTEFVSEPTTAFSKSCVGTHEYLAPELVNGNGHGNGVDWWAFGVLIYELLNGTTPFRGNNKESTLGNIASTTKQVHFKEDVTNNTSTVHIQDLITKLLVKDLKERLGCARGATDIKQHPFFNGIKWPLIRNYQPPEVKGLIVKKSSISRASHAGRWPLLHKKRRWLWKGLNCILLKSKGSKRNLNVNQNCYHYKHSTE | 462 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g05125 | 462 | Gene3D | Phosphorylase Kinase; domain 1 | 97 | 182 | - | - | |
| Cind3g05125 | 462 | PANTHER | FLIPPASE KINASE 1-RELATED | 27 | 404 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Cind3g05125 | 462 | ProSiteProfiles | Protein kinase domain profile. | 99 | 385 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cind3g05125 | 462 | MobiDBLite | consensus disorder prediction | 55 | 78 | - | - | |
| Cind3g05125 | 462 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 220 | 232 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cind3g05125 | 462 | Pfam | Protein kinase domain | 100 | 385 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cind3g05125 | 462 | FunFam | Probable serine-threonine-protein kinase cot-1 | 182 | 406 | - | - | |
| Cind3g05125 | 462 | SUPERFAMILY | Protein kinase-like (PK-like) | 77 | 401 | IPR011009 | - | |
| Cind3g05125 | 462 | SMART | serkin-6 | 99 | 385 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cind3g05125 | 462 | Gene3D | Transferase(Phosphotransferase) domain 1 | 183 | 400 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g05125 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:335793123 | Cind8g01926 | Cind-Chr8:242630284 | dispersed | |
| Cind | Cind-Chr3:335793123 | Cind3g03784 | Cind-Chr3:336501509 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g00449 | . | 231 | 368 | AGC Kinase gene family | AT4G13000 | 38.298 | 5.08e-14 | 73.6 | |
| Cind1g00450 | . | 231 | 368 | AGC Kinase gene family | AT4G13000 | 38.298 | 1.55e-14 | 72.0 | |
| Cind1g00695 | . | 15 | 465 | AGC Kinase gene family | AT3G08720 | 70.524 | 0.0 | 637.0 | |
| Cind1g00696 | . | 1 | 408 | AGC Kinase gene family | AT3G08720 | 62.56 | 1.34e-171 | 487.0 | |
| Cind1g02406 | . | 1072 | 1114 | AGC Kinase gene family | AT3G17850 | 60.465 | 1.69e-09 | 53.5 | |
| Cind1g06822 | . | 98 | 1274 | AGC Kinase gene family | AT3G17850 | 59.514 | 0.0 | 1298.0 | |
| Cind1g07644 | . | 477 | 784 | AGC Kinase gene family | AT5G62310 | 60.062 | 1.07e-119 | 370.0 | |
| Cind1g07645 | . | 72 | 1166 | AGC Kinase gene family | AT5G62310 | 59.878 | 0.0 | 1281.0 | |
| Cind1g07787 | . | 742 | 983 | AGC Kinase gene family | AT1G45160 | 34.836 | 3.13e-30 | 118.0 | |
| Cind2g00329 | . | 236 | 368 | AGC Kinase gene family | AT4G13000 | 37.5 | 6.92e-13 | 68.2 | |
| Cind2g00331 | . | 212 | 368 | AGC Kinase gene family | AT4G13000 | 36.875 | 2.06e-16 | 75.9 | |
| Cind2g00856 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 63.333 | 0.0 | 546.0 | |
| Cind2g00903 | . | 1 | 170 | AGC Kinase gene family | AT3G10540 | 78.235 | 3.46e-87 | 267.0 | |
| Cind2g01270 | . | 470 | 576 | AGC Kinase gene family | AT3G45780 | 35.398 | 3.81e-16 | 73.6 | |
| Cind2g01271 | . | 119 | 491 | AGC Kinase gene family | AT5G58140 | 29.288 | 8.65e-39 | 146.0 | |
| Cind2g01902 | . | 1 | 1009 | AGC Kinase gene family | AT1G45160 | 50.095 | 0.0 | 928.0 | |
| Cind2g03318 | . | 121 | 408 | AGC Kinase gene family | AT3G20830 | 61.775 | 4.08e-121 | 351.0 | |
| Cind2g04411 | . | 1 | 469 | AGC Kinase gene family | AT3G08720 | 69.62 | 0.0 | 666.0 | |
| Cind2g05244 | . | 209 | 368 | AGC Kinase gene family | AT4G13000 | 36.585 | 8.63e-15 | 75.1 | |
| Cind2g05245 | . | 681 | 983 | AGC Kinase gene family | AT1G45160 | 33.115 | 1.14e-31 | 133.0 | |
| Cind2g05246 | . | 212 | 368 | AGC Kinase gene family | AT4G13000 | 36.875 | 7.97e-16 | 77.0 | |
| Cind2g05885 | . | 135 | 429 | AGC Kinase gene family | AT3G08720 | 36.364 | 7.29e-48 | 176.0 | |
| Cind2g05596 | . | 73 | 586 | AGC Kinase gene family | AT5G47750 | 77.011 | 0.0 | 783.0 | |
| Cind3g00481 | . | 214 | 586 | AGC Kinase gene family | AT5G47750 | 76.471 | 0.0 | 597.0 | |
| Cind3g00921 | . | 8 | 178 | AGC Kinase gene family | AT3G25250 | 65.714 | 8.42e-76 | 232.0 | |
| Cind3g00922 | . | 247 | 393 | AGC Kinase gene family | AT3G25250 | 59.184 | 4.82e-60 | 189.0 | |
| Cind3g01843 | . | 1068 | 1114 | AGC Kinase gene family | AT3G17850 | 59.574 | 7.48e-11 | 57.8 | |
| Cind3g02989 | . | 99 | 765 | AGC Kinase gene family | AT2G44830 | 67.799 | 0.0 | 836.0 | |
| Cind3g03784 | . | 11 | 469 | AGC Kinase gene family | AT3G14370 | 57.053 | 2.92e-179 | 508.0 | |
| Cind3g03836 | . | 22 | 438 | AGC Kinase gene family | AT2G34650 | 59.326 | 2.46e-179 | 506.0 | |
| Cind3g03945 | . | 39 | 517 | AGC Kinase gene family | AT4G14350 | 70.772 | 0.0 | 700.0 | |
| Cind3g05125 | . | 11 | 469 | AGC Kinase gene family | AT3G14370 | 56.842 | 7.23e-178 | 505.0 | |
| Cind4g02326 | . | 10 | 518 | AGC Kinase gene family | AT4G33080 | 79.061 | 0.0 | 832.0 | |
| Cind4g02388 | . | 35 | 459 | AGC Kinase gene family | AT3G08720 | 57.016 | 8.11e-180 | 509.0 | |
| Cind4g02556 | . | 990 | 1073 | AGC Kinase gene family | AT3G17850 | 72.414 | 1.03e-28 | 109.0 | |
| Cind4g02707 | . | 773 | 1280 | AGC Kinase gene family | AT3G17850 | 73.735 | 0.0 | 733.0 | |
| Cind4g02710 | . | 260 | 715 | AGC Kinase gene family | AT3G17850 | 59.188 | 4.96e-177 | 529.0 | |
| Cind4g02716 | . | 117 | 1291 | AGC Kinase gene family | AT3G17850 | 65.029 | 0.0 | 1483.0 | |
| Cind4g04856 | . | 1 | 504 | AGC Kinase gene family | AT5G09890 | 75.542 | 0.0 | 814.0 | |
| Cind4g04114 | . | 1036 | 1132 | AGC Kinase gene family | AT5G62310 | 48.454 | 3.64e-23 | 92.8 | |
| Cind4g05331 | . | 135 | 288 | AGC Kinase gene family | AT3G12690 | 70.779 | 5.36e-76 | 235.0 | |
| Cind4g05332 | . | 292 | 555 | AGC Kinase gene family | AT1G79250 | 66.914 | 3.38e-119 | 350.0 | |
| Cind4g05469 | . | 111 | 555 | AGC Kinase gene family | AT1G79250 | 71.84 | 0.0 | 655.0 | |
| Cind5g03522 | . | 99 | 765 | AGC Kinase gene family | AT2G44830 | 69.469 | 0.0 | 890.0 | |
| Cind5g04652 | . | 27 | 538 | AGC Kinase gene family | AT4G14350 | 82.685 | 0.0 | 897.0 | |
| Cind5g05307 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 45.397 | 0.0 | 668.0 | |
| Cind6g00134 | . | 127 | 373 | AGC Kinase gene family | AT3G25250 | 57.708 | 6.49e-93 | 280.0 | |
| Cind6g00648 | . | 142 | 247 | AGC Kinase gene family | AT5G04510 | 32.143 | 2.63e-08 | 55.5 | |
| Cind6g03525 | . | 35 | 537 | AGC Kinase gene family | AT4G14350 | 77.712 | 0.0 | 837.0 | |
| Cind6g03657 | . | 76 | 586 | AGC Kinase gene family | AT5G47750 | 80.077 | 0.0 | 828.0 | |
| Cind7g01205 | . | 13 | 385 | AGC Kinase gene family | AT1G51170 | 57.219 | 2.71e-145 | 415.0 | |
| Cind7g01616 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 67.615 | 0.0 | 565.0 | |
| Cind7g01617 | . | 465 | 902 | AGC Kinase gene family | AT3G52890 | 62.812 | 0.0 | 566.0 | |
| Cind7g02442 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 65.244 | 0.0 | 636.0 | |
| Cind7g03945 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 57.963 | 2.29e-155 | 446.0 | |
| Cind7g04495 | . | 136 | 499 | AGC Kinase gene family | AT5G40030 | 79.032 | 0.0 | 615.0 | |
| Cind7g04949 | . | 31 | 1164 | AGC Kinase gene family | AT5G62310 | 54.397 | 0.0 | 1175.0 | |
| Cind8g01245 | . | 324 | 389 | AGC Kinase gene family | AT3G44610 | 42.424 | 2.49e-14 | 64.3 | |
| Cind8g01926 | . | 1 | 378 | AGC Kinase gene family | AT1G53700 | 62.435 | 1.61e-147 | 424.0 | |
| Cind8g02979 | . | 1 | 996 | AGC Kinase gene family | AT3G45780 | 67.966 | 0.0 | 1383.0 | |
| Cind8g04072 | . | 135 | 269 | AGC Kinase gene family | AT5G58140 | 38.889 | 6.40e-21 | 95.9 | |
| Cind9g00561 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 3.07e-21 | 96.7 | |
| Cind9g03574 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 3.38e-21 | 96.7 | |
| Cind9g03729 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 47.346 | 0.0 | 686.0 | |
| Cind9g03787 | . | 53 | 910 | AGC Kinase gene family | AT5G58140 | 70.575 | 0.0 | 1260.0 | |
| Cind9g04200 | . | 96 | 546 | AGC Kinase gene family | AT5G47750 | 67.031 | 0.0 | 610.0 | |
| Cind9g04201 | . | 177 | 578 | AGC Kinase gene family | AT3G27580 | 69.287 | 0.0 | 564.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cind | Pkinase | 9.9e-59 | CL0016 | PK | AGC_RSK-2 |