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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05575 ATGGGCTCAGAACAATATTCTGGTTATAGAGTAACTGGTCAACCCTCATCTTACTCATCTCCCAAATCACAAATCCCTTTATTTCCCACAAGACGAATCGAATCCTTAAAGTTTGAATCAAGAGACTCACCCAATTCTCCCTTCGTAAATCCGTTTGATTCAGAGGTATTCACCACAAATAGCGATAGTCGAGAAAAATACAGCTCAACCTCAGGTGCTAGCCCTTCTTCCCTCGAAGATTGTAGCTCTGTTAACCCTTCAAGCAGTGTTCATTACATGATCAATGCTCTTCAAGATATAGAGACCACTCTAATGGCCCCAGATGATGACATATCCATGCCCATTAACCCTTCTTATGGTCAAAACCAGTGGCCACAACCGTCAAACCAAAGGCCTGCACAGTGGACCCATGAACCCACCAGTTCAAACATGGTTCAGCCCCAAGTTCTACATACTACTAGTAATCTAAAACAGTTGCTTACTGCCTGTGCAAGTGCACTTGCTGGAAACAAGCTTGATGAGTTTAAGGTCCTGGTTGAACATGCGCGAGCTTTGGTGTCGATTAGTGGCGACCCAATACAGAGGCTAGGTGCTTATATGGTCGAAGGTTTGGTAGCTAGGCGGGAATTGTCTGGGACTCACATATATCGAGCCTTAAGGTGTCGGGAACCCGAAGGTAAAGACTTACTTTCCTACATGCAAATCTTATACGATATATGCCCGTATTTGAAGTTCGGGTACATGGCTGCAAACGGTGCAATAGCAGAAGCTTGCAGAAATGAAGATCGAATCCACATCATCGACTTCCAAATAGCTCAAGGGACACAATGGATGACACTTCTGCAGGCTCTTGCTGCTAGACCTGGGGGCCCACCTCACGTCCGTATTACGGGAATTGACGATCCAGTTTCGAAATATGCACGTGGCGACAGTTTGGAGTTAGTTGGAAAACGATTAGAAATGGTTTCTAAAAAGTTTAATATCCCGATTGAGTTTCACCCGCTTCCGGTTTACGCACCACAGGTGACAAAATCAATGCTTGATGTAAGACCAGGTGAGGCCTTAGCGGTGAATTTCCCGCTTCAACTTCATCACATGCCGGACGAAAGTGTTGACGTGAATAACCCACGAGACGAACGGTTAAGAATGGTTAAATCACTTTCACCGAAAGTTGTTACTTTAATCGAGCAAGAATCGAACACAAACACAGCAGCTTTCTTACCCAGGTTCTTGGAAGCCCTTGACTATTACTCTGCAATGTTCGAGTCAATGGATGCAACTTCAACACGGGATAAAAAAGAACGAATAAACGTGGAACAACATTGCTTGGCTCGAGACATAGTCAACATCATAGCATGTGAAGGTAAAGAACGAGTTGAAAGACACGAGCTTTTCAAGAAGTGGAGGTCAAGGTTAACAATGGCGGGGTTTAAACAGTATCCGTTAAGTGGGTATGTAAATTCGGTTATTAGGGATTTGCTAAAGTGCTACTCGAAGCATTATACATTGGTGGAAGAAGATGGAGCTATGCTGTTGGGTTGGAAAGAACGAAATCTTATATCAGCATCTGCTTGGCACTGA 1581 44.09 MGSEQYSGYRVTGQPSSYSSPKSQIPLFPTRRIESLKFESRDSPNSPFVNPFDSEVFTTNSDSREKYSSTSGASPSSLEDCSSVNPSSSVHYMINALQDIETTLMAPDDDISMPINPSYGQNQWPQPSNQRPAQWTHEPTSSNMVQPQVLHTTSNLKQLLTACASALAGNKLDEFKVLVEHARALVSISGDPIQRLGAYMVEGLVARRELSGTHIYRALRCREPEGKDLLSYMQILYDICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSKYARGDSLELVGKRLEMVSKKFNIPIEFHPLPVYAPQVTKSMLDVRPGEALAVNFPLQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTLIEQESNTNTAAFLPRFLEALDYYSAMFESMDATSTRDKKERINVEQHCLARDIVNIIACEGKERVERHELFKKWRSRLTMAGFKQYPLSGYVNSVIRDLLKCYSKHYTLVEEDGAMLLGWKERNLISASAWH 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05575 526 MobiDBLite consensus disorder prediction 1 26 - -
Cind3g05575 526 MobiDBLite consensus disorder prediction 1 84 - -
Cind3g05575 526 MobiDBLite consensus disorder prediction 107 141 - -
Cind3g05575 526 Pfam GRAS domain family 156 525 IPR005202 -
Cind3g05575 526 ProSiteProfiles GRAS family profile. 147 526 IPR005202 -
Cind3g05575 526 MobiDBLite consensus disorder prediction 40 84 - -
Cind3g05575 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 525 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cind3g05575 526 MobiDBLite consensus disorder prediction 115 141 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05575 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1730145 Cind Cind3g02598 Cind-Chr3:344622014 Cind3g05575 Cind-Chr3:318583842
1732626 Cind Cind3g05575 Cind-Chr3:318583842 Cind6g00170 Cind-Chr6:177169177
1769320 Cind Cind3g05575 Cind-Chr3:318583842 Cind8g02142 Cind-Chr8:247584633
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00031 . 253 555 GRAS Transcription Factor family AT4G00150 38.585 5.62e-63 204.0
Cind1g00465 . 253 324 GRAS Transcription Factor family AT4G00150 48.718 1.42e-18 80.5
Cind1g01248 . 154 286 GRAS Transcription Factor family AT1G21450 50.0 5.25e-26 99.0
Cind1g01256 . 70 700 GRAS Transcription Factor family AT2G37650 45.3 1.55e-178 523.0
Cind1g01642 . 53 413 GRAS Transcription Factor family AT2G04890 32.208 4.69e-53 182.0
Cind1g01643 . 53 413 GRAS Transcription Factor family AT2G04890 32.208 5.65e-53 181.0
Cind1g03454 . 170 547 GRAS Transcription Factor family AT3G03450 29.049 6.79e-55 192.0
Cind1g03455 . 170 547 GRAS Transcription Factor family AT3G03450 29.124 1.21e-53 188.0
Cind1g03456 . 170 547 GRAS Transcription Factor family AT3G03450 27.949 9.76e-52 182.0
Cind1g03457 . 170 470 GRAS Transcription Factor family AT3G03450 28.115 3.25e-32 127.0
Cind1g03458 . 170 546 GRAS Transcription Factor family AT3G03450 28.354 1.82e-50 179.0
Cind1g03506 ACH 31 640 GRAS Transcription Factor family AT5G52510 41.667 4.81e-127 386.0
Cind1g04574 . 376 427 GRAS Transcription Factor family AT2G37650 55.769 2.13e-13 63.5
Cind1g05431 . 73 718 GRAS Transcription Factor family AT2G37650 51.511 0.0 639.0
Cind1g05782 . 30 656 GRAS Transcription Factor family AT1G63100 51.805 0.0 551.0
Cind1g07319 . 92 555 GRAS Transcription Factor family AT4G00150 39.619 9.60e-106 329.0
Cind1g07494 . 40 444 GRAS Transcription Factor family AT1G55580 45.343 2.48e-108 324.0
Cind2g00416 . 241 651 GRAS Transcription Factor family AT3G54220 80.769 0.0 665.0
Cind2g02768 . 457 608 GRAS Transcription Factor family AT2G29060 68.627 3.84e-70 224.0
Cind2g02782 . 161 529 GRAS Transcription Factor family AT1G14920 35.443 2.71e-76 249.0
Cind2g03762 . 376 530 GRAS Transcription Factor family AT2G37650 48.387 7.85e-36 130.0
Cind2g04182 . 140 519 GRAS Transcription Factor family AT1G50600 56.266 7.80e-144 422.0
Cind2g04816 . 21 530 GRAS Transcription Factor family AT1G14920 63.602 0.0 658.0
Cind2g04989 . 64 490 GRAS Transcription Factor family AT5G48150 69.767 0.0 614.0
Cind2g05219 . 338 645 GRAS Transcription Factor family AT3G54220 85.761 0.0 547.0
Cind2g05220 . 98 188 GRAS Transcription Factor family AT3G54220 54.0 1.34e-26 106.0
Cind2g05500 . 23 444 GRAS Transcription Factor family AT1G55580 47.113 3.85e-121 358.0
Cind3g00549 . 271 418 GRAS Transcription Factor family AT1G50600 64.865 4.13e-66 213.0
Cind3g00551 . 140 596 GRAS Transcription Factor family AT1G50600 61.987 0.0 575.0
Cind3g00695 . 24 151 GRAS Transcription Factor family AT1G66350 38.931 5.91e-22 89.4
Cind3g01677 . 141 651 GRAS Transcription Factor family AT3G54220 70.98 0.0 713.0
Cind3g02036 . 147 506 GRAS Transcription Factor family AT1G66350 36.761 1.73e-66 221.0
Cind3g02598 . 45 439 GRAS Transcription Factor family AT5G48150 56.11 3.44e-153 440.0
Cind3g03111 . 73 714 GRAS Transcription Factor family AT2G37650 53.064 0.0 654.0
Cind3g03771 . 103 555 GRAS Transcription Factor family AT4G00150 51.786 1.50e-158 464.0
Cind3g05189 . 223 767 GRAS Transcription Factor family AT1G07530 52.641 0.0 564.0
Cind3g05697 . 35 767 GRAS Transcription Factor family AT1G07530 44.236 0.0 583.0
Cind3g05701 ACH 580 767 GRAS Transcription Factor family AT1G07530 61.17 1.81e-82 257.0
Cind3g05575 . 73 489 GRAS Transcription Factor family AT5G48150 57.506 2.20e-173 496.0
Cind3g05992 . 2 767 GRAS Transcription Factor family AT1G07530 43.782 0.0 556.0
Cind4g00942 . 159 353 GRAS Transcription Factor family AT1G50420 31.795 5.05e-26 100.0
Cind4g02280 . 28 484 GRAS Transcription Factor family AT4G36710 47.589 2.21e-131 388.0
Cind4g02568 . 158 297 GRAS Transcription Factor family AT1G14920 44.444 8.27e-32 126.0
Cind4g02569 . 331 507 GRAS Transcription Factor family AT1G66350 46.703 9.55e-47 157.0
Cind4g03126 . 165 529 GRAS Transcription Factor family AT1G14920 34.974 3.02e-68 228.0
Cind4g03525 . 171 544 GRAS Transcription Factor family AT3G03450 34.491 1.43e-57 198.0
Cind4g03659 . 376 530 GRAS Transcription Factor family AT2G37650 47.097 2.37e-34 126.0
Cind4g04026 . 7 510 GRAS Transcription Factor family AT3G13840 45.779 2.29e-152 444.0
Cind5g00501 . 163 351 GRAS Transcription Factor family AT3G03450 30.052 4.93e-13 66.6
Cind5g02238 . 204 555 GRAS Transcription Factor family AT4G00150 57.377 3.58e-140 417.0
Cind5g02269 . 331 479 GRAS Transcription Factor family AT1G50420 68.456 1.13e-74 229.0
Cind5g02270 . 164 247 GRAS Transcription Factor family AT1G50420 71.429 4.40e-37 127.0
Cind5g03961 . 141 530 GRAS Transcription Factor family AT4G37650 52.618 5.24e-140 409.0
Cind6g00170 . 1 525 GRAS Transcription Factor family AT4G17230 51.699 0.0 540.0
Cind6g01773 . 152 516 GRAS Transcription Factor family AT5G17490 25.316 2.03e-19 89.0
Cind6g01774 . 107 408 GRAS Transcription Factor family AT3G49950 21.782 7.21e-12 64.7
Cind6g01775 . 259 515 GRAS Transcription Factor family AT5G17490 23.443 3.67e-09 55.5
Cind6g01776 . 97 515 GRAS Transcription Factor family AT5G17490 23.451 4.95e-18 85.1
Cind6g01777 . 175 530 GRAS Transcription Factor family AT3G03450 23.219 1.84e-15 77.8
Cind6g01778 . 152 505 GRAS Transcription Factor family AT1G66350 25.654 5.90e-16 78.6
Cind6g02759 . 20 766 GRAS Transcription Factor family AT1G07530 46.859 0.0 602.0
Cind6g02760 ACH 59 581 GRAS Transcription Factor family AT3G46600 45.455 4.21e-163 476.0
Cind6g04225 . 491 593 GRAS Transcription Factor family AT1G21450 66.99 7.87e-44 152.0
Cind7g02006 . 86 767 GRAS Transcription Factor family AT1G07530 44.298 0.0 561.0
Cind7g02611 ACH 185 640 GRAS Transcription Factor family AT5G52510 46.429 7.77e-114 349.0
Cind7g03525 . 4 316 GRAS Transcription Factor family AT1G50420 55.591 6.87e-107 317.0
Cind7g04237 . 45 545 GRAS Transcription Factor family AT3G03450 63.168 0.0 663.0
Cind7g04310 . 37 486 GRAS Transcription Factor family AT4G36710 47.335 5.96e-134 395.0
Cind7g04648 . 4 482 GRAS Transcription Factor family AT1G50420 65.145 0.0 624.0
Cind8g00538 ACH 296 650 GRAS Transcription Factor family AT3G54220 55.307 8.26e-139 412.0
Cind8g01414 . 1 510 GRAS Transcription Factor family AT3G13840 46.341 2.98e-145 426.0
Cind8g01986 . 150 507 GRAS Transcription Factor family AT1G66350 31.034 2.58e-57 197.0
Cind8g02028 . 551 631 GRAS Transcription Factor family AT2G29060 44.444 7.67e-20 81.3
Cind8g02029 . 322 413 GRAS Transcription Factor family AT5G59450 61.957 1.06e-32 127.0
Cind8g02142 . 38 490 GRAS Transcription Factor family AT5G48150 67.888 0.0 626.0
Cind8g02864 . 4 767 GRAS Transcription Factor family AT1G07530 46.96 0.0 642.0
Cind8g03557 . 296 463 GRAS Transcription Factor family AT3G54220 57.988 3.11e-63 209.0
Cind9g00039 . 1 530 GRAS Transcription Factor family AT4G37650 54.991 0.0 550.0
Cind9g00059 . 12 409 GRAS Transcription Factor family AT3G49950 61.259 0.0 519.0
Cind9g00264 . 508 649 GRAS Transcription Factor family AT3G54220 48.611 1.11e-41 144.0
Cind9g01749 . 205 555 GRAS Transcription Factor family AT4G00150 46.467 1.92e-99 310.0
Cind9g02860 . 1 584 GRAS Transcription Factor family AT5G66770 51.151 0.0 524.0
Cind9g04343 . 8 409 GRAS Transcription Factor family AT3G49950 44.869 2.73e-118 349.0
Cind9g04344 . 8 161 GRAS Transcription Factor family AT3G49950 49.693 2.06e-44 150.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind GRAS 1.4e-133 CL0063 TF GRAS