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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05607 ATGGCTGCCTTCACATTTTCACCCAAAACTCATTCTCACCCTTGTGGTAGTGCTAGTAACAATGAAGTGTTGTTGTTGTCAAAGACAAAAGGGTTAAGAACAAATTCAGTTCGATATGAAATGAAGGTCACGTGCCAGGCAGCAGCAGCTGTTGCTGACGTGGAAAAGAGGAAGTTAATGAAGATGTTGTTGTTTGGTGCTGTTGTTGGTTTACCTGCTGCTGCTGGTTTGTTGGTTCCTTATTCCGACTCTTTTGCTACACCTGGTTCAGGCAGTTCCAAAGGTGGCACTGTCGCCAAAGATGAGTTTAGTAATGATATCATTGCATCAGAATGGCTAAAGACCCACGGACCTGGTGAAAGAACTCTTGCTCAAGGCTTAAAGGGACATCCTACGTACCTTATGGTCGAGAACAACAGAACGTTTGCAACATATGGGATTAATGTGGTATGCACCCATTTAGGGTGTATCGTGCCATGGAACACGGTGGAGAAGAAGTTTGTATGCCCCTGCCACGGTTCTCAGTTTGATAATGATGGCAAAGTTGTCAAGGGTCCTGCTCCTCAGTCTTTGGAACTGGCTCGTGTGGATATAGATGATGGCAAAGTGGTGTTTGCTCCATGGAGGGAAACCGATTTTAGAACAGGCGATGCTCCATGGTGGTCTTAA 669 45.44 MAAFTFSPKTHSHPCGSASNNEVLLLSKTKGLRTNSVRYEMKVTCQAAAAVADVEKRKLMKMLLFGAVVGLPAAAGLLVPYSDSFATPGSGSSKGGTVAKDEFSNDIIASEWLKTHGPGERTLAQGLKGHPTYLMVENNRTFATYGINVVCTHLGCIVPWNTVEKKFVCPCHGSQFDNDGKVVKGPAPQSLELARVDIDDGKVVFAPWRETDFRTGDAPWWS 222
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05607 222 Gene3D - 88 222 IPR036922 GO:0051537(InterPro)
Cind3g05607 222 CDD Rieske-cytochrome-b6f 97 222 - -
Cind3g05607 222 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 112 205 IPR017941 GO:0051537(InterPro)
Cind3g05607 222 Gene3D Single helix bin 43 87 - -
Cind3g05607 222 SUPERFAMILY ISP domain 104 221 IPR036922 GO:0051537(InterPro)
Cind3g05607 222 FunFam Cytochrome b6-f complex iron-sulfur subunit 88 222 - -
Cind3g05607 222 Pfam Rieske [2Fe-2S] domain 131 191 IPR017941 GO:0051537(InterPro)
Cind3g05607 222 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 41 209 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Cind3g05607 222 PRINTS Rieske 2Fe-2S subunit signature 167 179 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cind3g05607 222 PRINTS Rieske 2Fe-2S subunit signature 179 191 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cind3g05607 222 PRINTS Rieske 2Fe-2S subunit signature 146 157 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05607 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:370680269 Cind3g05607 Cind-Chr3:320499759 wgd