AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05625 ATGGTGGCCATCTTATCCTTCACCACATCCCCAACAAACTTCGGAGTAATTAATAATAACAATTCAAACAGAACATTATCATCAGCAGTTTCATTAAAGTCAAGCTCACAAATCACCATACCTAATAACATTAACCTTCATCAACATTATCCTCCGCTGTTTGTTCCTGAGGTTGAGAGTGCAGTAGATACATTGTATCCGGAGTTCAGGGCAGTGGATAATCTTGTGGCACGTAATACGTCTAGAGTTCTCAAAGCTTTTCAAAACGCCAGAGTTGGATCACATCACTTTGGTGGTTGCACTGGCTATGGCCATGAAGAAGCTGGAGGTCGAGAAGCCCTTGACCAAGCTTTTGCAGAAATTTTTGGTGCTGAGTCAGCAATTGTCCGTTCACAGTTCTTCTCAGGTACTCATGCTATTACGTGTGCACTTTTTGCTTTCTTGAGGCCAGGTGATGAGCTTTTGGCGGTTGCTGGTGCTCCATATGATACACTTGAGGAAGTTATAGGAATCAGGGATGGTAATGGATTAGGTTCCTTGAAAGATTTTGGAATCAAGTATCGGGAAGTTGCACTTGCAGATGATGGAGGACTTGATTGGGATGCCCTTGAGGTCGCTTTAAAACCTGAAACGAAATGTGCCCTTATACAGAGGTCGTGTGGGTATTCTTGGCGGAAAAGCTTAAGTGTGACTGAAATTTTTAGGGCAATAGACATCATTAAGAGGCAAAATCCAAATTGTTTGGTTATGGTGGATAACTGTTATGGTGAATTCACAGAAGCAATTGAACCTCCAATGGTGGGCGCAGATCTTATTGCAGGAAGTTTAATTAAAAATCCTGGTGGAACAATTGCACCATGTGGTGGATACGTTGCAGGAAAAGAAAAATGGGTAAATGCAGCAGCAGCTCGTCTGTCTGCACCAGGTCTCGGGGTTGACTGCGGGTCAACTCCTGGTGACATTATGCGAACATTCTTTCAAGGATTATATCTCTCGCCTCAAATGGTTGGGGAAGCAATAAAGGGAGGCTTGCTGATTGCTGAAGTTATGTCAACAAAAGGTTACAAGGTTCAGCCACTTCCTCGAGTACCCCGTCATGACATAGTGCAGGCTGTACAACTTGGAAGCCGTGAGAAGCTTCTTGCTTTTTGTGAGGCTGTACAAAGAAGCTCACCTGTAAGCTCCTATACCCAACCAATTGCAGGTTCATCAGCTGGATATGCTTCAGAGGTTATATTTGCTGATGGGACGTTTATAGATGGAAGCACAAGTGAGCTCTCGTGTGATGGACCGTTAAGGGAGCCATTTTGTGTCTTCTGTCAGGGTGGTACTCACTGGACTCAATGGGGACTAGTTCTTGGTGAAATCTTGAAATCATTGTAG 1383 43.89 MVAILSFTTSPTNFGVINNNNSNRTLSSAVSLKSSSQITIPNNINLHQHYPPLFVPEVESAVDTLYPEFRAVDNLVARNTSRVLKAFQNARVGSHHFGGCTGYGHEEAGGREALDQAFAEIFGAESAIVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIGIRDGNGLGSLKDFGIKYREVALADDGGLDWDALEVALKPETKCALIQRSCGYSWRKSLSVTEIFRAIDIIKRQNPNCLVMVDNCYGEFTEAIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAGKEKWVNAAAARLSAPGLGVDCGSTPGDIMRTFFQGLYLSPQMVGEAIKGGLLIAEVMSTKGYKVQPLPRVPRHDIVQAVQLGSREKLLAFCEAVQRSSPVSSYTQPIAGSSAGYASEVIFADGTFIDGSTSELSCDGPLREPFCVFCQGGTHWTQWGLVLGEILKSL 460
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05625 460 Gene3D - 106 314 IPR015421 -
Cind3g05625 460 Gene3D - 55 105 - -
Cind3g05625 460 Pfam Methionine gamma-lyase 59 458 IPR009651 -
Cind3g05625 460 SUPERFAMILY PLP-dependent transferases 78 457 IPR015424 -
Cind3g05625 460 Gene3D - 315 460 - -
Cind3g05625 460 PANTHER CYS OR MET METABOLISM PYRIDOXAL-PHOSPHATE-DEPENDENT ENZYME 24 460 IPR009651 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05625 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:321489159 Cind5g00867 Cind-Chr5:91119352 dispersed
Cind Cind-Chr3:321489159 Cind8g00012 Cind-Chr8:202517425 transposed