AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g05649 | AATATTGATGACTTGCCTTTACATTTGATTCTTGAAATCTTGACATGTGGGTTGGGTGGTGTGGATCTTGTGTGTTTGGAGTTAAGTTGTAAGCTTTTTAGAGATGGGTATGAGTTGGTTCCTTTGAATTTTAAGTCTTTAGGTGAGTTTGCGGCTTTTCGCCTTTGTGGGTCGAATCCGGTTTTTGTTGGTTTGAGTGATGGAGCTAAGGATGAGCTTTTGGCTAGGTGTGGTGGGTGTTGGAAGAGGGTTTTGAGGTTCTTGCAATCGGTTAACGAGTCTTCGGATGTTGTGCAAACTTATTCGGGCAATATGCAAATTAGGAGTGGAAGGTATCATACATTACTGATCAAGGATTCAAAGCTTTACTCATGTGGTTCAAGTTTGTGTGGTGTTCTTGGTCATGGTCCTGAAACCACGCAATGTGCTGCATTTACTCGGATTAAGTTCCCATATCATGTCAATGTTACACACGTTTCCGCCTCCCATAATCATGCTGCCTTTGTCACTCAGTCAGGAGAGGTGTTCACTTGTGGTGACAATTCGTCCTTCTGTTGTGGGCATAGTGATACAAACCGTCCAATATTCAAGCCTCGCCTTGTTGAAGCCTTAAAGGAAGTTTCTTGCAAGCAGGTTGCTACTGGTGTTAGCTTTACTATGTTTCTCACAACCGATGGCCAAGTATACACATGTGGGATCAACACACAAGGTCAACTAGGCCATGGTGACGCCTTAGATAGACCAATACCGAAACTTGTAGAAGGGCTTGTGACTGTTGGTCCTGTTGTACAGATTACCGCTGGTCCAAGCTATGCACTTGCTGTCACAAGCGATGGATCAGTTTATTCATTTGGTTCTGGAACCAATTTCTGTCTCGGTCATGGCGAGCAGCACAGTGAACTCAGCCCTCGGCCACTTCAATGGTTTAGGAGAAAAGGCATACATGTGGTTCGTGTGTCTGCTGGCGACGAGCATGTTGTTGCACTCGATTCTAATGGATACGTTTACACATGGGGCAAAGGTTATTGTGGCGCACTTGGTCATGGTGATGAGATTGATAAAACGACTCCGGAGCTCTTAGCCAGCCTTAAAACGCACCTCGCTGTTCAGGTGTGTGCAAGCAAGAGGAAGACATTTGTGTTAGTCGATAATGGATGTTTATATGGATTTGGATGGATGGGGTTCGGGAGCTTGGGGTTCCCAGATAGAGGTGTATCCGATAAAGTGTTGAAGCCTAGCAGACTTTACAGTCTAAAGGATCATCATATTTCACAAGTGAGCACAGGTTTGTATCACTCGGTTGTACTCACTAATCGTGGCCGGATATTTGGATTTGGAGACAATGAACGAGGACAACTGGGTCATGATAAGTTAAGAGATTGT | 1383 | 44.61 | NIDDLPLHLILEILTCGLGGVDLVCLELSCKLFRDGYELVPLNFKSLGEFAAFRLCGSNPVFVGLSDGAKDELLARCGGCWKRVLRFLQSVNESSDVVQTYSGNMQIRSGRYHTLLIKDSKLYSCGSSLCGVLGHGPETTQCAAFTRIKFPYHVNVTHVSASHNHAAFVTQSGEVFTCGDNSSFCCGHSDTNRPIFKPRLVEALKEVSCKQVATGVSFTMFLTTDGQVYTCGINTQGQLGHGDALDRPIPKLVEGLVTVGPVVQITAGPSYALAVTSDGSVYSFGSGTNFCLGHGEQHSELSPRPLQWFRRKGIHVVRVSAGDEHVVALDSNGYVYTWGKGYCGALGHGDEIDKTTPELLASLKTHLAVQVCASKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGVSDKVLKPSRLYSLKDHHISQVSTGLYHSVVLTNRGRIFGFGDNERGQLGHDKLRDC | 461 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g05649 | 461 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 385 | 439 | IPR000408 | - | |
| Cind3g05649 | 461 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 426 | 436 | IPR000408 | - | |
| Cind3g05649 | 461 | CDD | F-box-SF | 3 | 35 | - | - | |
| Cind3g05649 | 461 | Gene3D | - | 82 | 274 | IPR009091 | - | |
| Cind3g05649 | 461 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 173 | 225 | IPR000408 | - | |
| Cind3g05649 | 461 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 120 | 172 | IPR000408 | - | |
| Cind3g05649 | 461 | SUPERFAMILY | RCC1-BLIP-II | 100 | 401 | IPR009091 | - | |
| Cind3g05649 | 461 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 226 | 278 | IPR000408 | - | |
| Cind3g05649 | 461 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 333 | 384 | IPR000408 | - | |
| Cind3g05649 | 461 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 332 | 381 | IPR000408 | - | |
| Cind3g05649 | 461 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 278 | 329 | IPR000408 | - | |
| Cind3g05649 | 461 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 225 | 275 | IPR000408 | - | |
| Cind3g05649 | 461 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 172 | 222 | IPR000408 | - | |
| Cind3g05649 | 461 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 279 | 332 | IPR000408 | - | |
| Cind3g05649 | 461 | PRINTS | Chromosome condensation regulator RCC1 signature | 280 | 296 | IPR000408 | - | |
| Cind3g05649 | 461 | PRINTS | Chromosome condensation regulator RCC1 signature | 426 | 442 | IPR000408 | - | |
| Cind3g05649 | 461 | PRINTS | Chromosome condensation regulator RCC1 signature | 316 | 329 | IPR000408 | - | |
| Cind3g05649 | 461 | PRINTS | Chromosome condensation regulator RCC1 signature | 442 | 456 | IPR000408 | - | |
| Cind3g05649 | 461 | PRINTS | Chromosome condensation regulator RCC1 signature | 335 | 351 | IPR000408 | - | |
| Cind3g05649 | 461 | Gene3D | - | 275 | 461 | IPR009091 | - | |
| Cind3g05649 | 461 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 423 | 452 | - | - | |
| Cind3g05649 | 461 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 105 | 308 | IPR051210 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g05649 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:322736186 | Cind9g01893 | Cind-Chr9:260071195 | dispersed | |
| Cind | Cind-Chr3:322276003 | Cind3g05649 | Cind-Chr3:322736186 | proximal |