AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05655 ATGAGAGGAATTATTGGTAAATTTCCATCAAGTGATGGAAATGGTGAAGTTGGTAGTGCTAATGGGATCATAAAACACAACAGAAAATGCAAAGATGTTGTGTTTCTTGTCTTTTTTATTGCTTTTTGGGTTGCTATGATTGTTAACTCAAGTTTTGGGTTCAACCAAGGAAACCCTTTAAGGCTAAACTTCGGGTTGGATTATAAAGGAAACGTATGTGGAGGCAAACGCAAAGATTTTAACCTGCAAGAATTGGAACTCAAATACTATGTTAATCCTAACCAAGTTTACCAAAGTGGATCAAAGAATAGTGGATTCAAACTGTCTAACGCCCGAACAATATGTTTGTTAGATTGTCCCATACCATCAGAAGATTCTCTAAATTGGGTTTGTGATTATCCAGAGGGTGATATCCGTCTATCATTAGATGATTGGATCGATATGAATTATGATTATTTTGCTGACCTTACTCCTGAACTAAGAAACACTTCTCTTCAGCTTCAAGGTCCTTGTTACCCTGTCATTTTTCCAAGCGTAAACGTTTATTGGACTTGCCAGTTTATTGATCGCCCATCAAATGTGTCCTTAACACATTGGAAGCAAATGAATGGTGTTACCATCAATGATGACATGGTCATAGATAAATCTATTCATAAAGCCATCAACGCCCGGTCTTCAGTTTTAAAGAGATATGTGGCTGATGTTGGAAAATCATGGCCAGTGCTGCTTGTATGCGGTGGATTCTTGCCTCTATTTCTGTCGTTGCTATGGCTTTTAATGATTCGACATTTTGTTGCTGGAATGCCATGGGTTACCGTATTTTTCTTTAATGGTCTCATAATATCAGTCACAATGTTCTACTACATGAAAGCTGGATGGATTGGAGACGACGCTATCTCGCCCATCATTGGTGAACATGATCCATACTATCATGTTTCTGCGAGGGAGCAACATCATATTCGTGCTGCTGCTTTTTTCATGACATGTGTGATGATTGTTGCTGTTTTATCATCCATAGCTATTGTAAGGCGGATCCTCATGGCAACTTCAGTACTTAAGGTTGCAGCAAAGGTCATTGGAGAAGTTCATGCTCTCATAATATTTCCAGTCATACCATACCTAATCCTTGCAGTTTTTTACATGTTTTGGTTGTCGGCTGCCCTCCATCTTTTCAGTTCAGGTCAAATAGTCCGCAATGATTGCAGTACAAATTGCTGTGCTTATGATCTTAAAGCTAAAAGGGTTAGCTGTGATGATTGTTGTGGCTATAGCATCCAGTACACCCCTCATATAGCAGCTTCAATTTTATTCCACTTATTCGGGTGCTACTGGGCTACTCAGTTTATCATAGCATGCTCTTCAACCGTGATTGCCGGTTCTGTAGCTTCCTACTATTGGGCTCGTGGGGAATCTTCGACAACGATTCCATTTCTTCCAGTTTTCTCGTCAATGAAGCTACTCATGCGGTACAGCCTTGGATCAGTGGCAATTGGGTCCTTGATTGTATCGTTTGTTGAGTCATCTCGCTTCATACTCGAGGCCATACGTCGCAGATTAAAAGTTGCTAACATTATGCCCGACAGCTGGATTAAGAGGATGATGTTCCATACTTCTCGGTTCTGCTTAAAGGGTATTGAATTGACCATCAAATCTGTAAACCGCAATGCATACATTATGATTGCTATAACCGGAAAAGGGTTTTTTAGAGCTTCTGAGATGGCAACAGATTTGATAATTAGTAACATTCTACGTATAGGCAAAGTGAATGTCATCGGGGATGTTATTCTCTTTCTTGGCAAGTTGTGTGTCAGTCTTGCAAGTGCACTTTTCGCGTTCCTTATGTTGGATACTCACAAATACAAATCATCCCATAACAAGATTACATCCCCGTTATTTCCCGTGCTAGTTTGCTGGGGTCTAGGATATATAGTGGCTACCCTCTTCTTTGCAGTGGTGGAAATGTCGATTGATACCATTATCCTTTCATATTGCCAAGATGCAGAGGAGCATCAAGGAACCGCACATTATGCTCCCCCACTTTTAATCGAAACATTTGATGATCAAAATGAGGTGCAAAGAATTGGACAATGA 2091 40.12 MRGIIGKFPSSDGNGEVGSANGIIKHNRKCKDVVFLVFFIAFWVAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKRKDFNLQELELKYYVNPNQVYQSGSKNSGFKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVTINDDMVIDKSIHKAINARSSVLKRYVADVGKSWPVLLVCGGFLPLFLSLLWLLMIRHFVAGMPWVTVFFFNGLIISVTMFYYMKAGWIGDDAISPIIGEHDPYYHVSAREQHHIRAAAFFMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPVIPYLILAVFYMFWLSAALHLFSSGQIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIQYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESSRFILEAIRRRLKVANIMPDSWIKRMMFHTSRFCLKGIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYIVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDDQNEVQRIGQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05655 696 Pfam Plasma-membrane choline transporter 326 668 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cind3g05655 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 21 686 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05655 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:9836636 Cind3g05655 Cind-Chr3:323132723 dispersed
Cind Cind-Chr3:323132723 Cind4g00408 Cind-Chr4:209685150 dispersed