AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05657 ATGACTGGACTGTCATTGGATATAAGAACACAGAGTTATGCATCACCTCAGCAGCCGCAGAATGGTTCATTGCAGACTCAAAATGGGTTCATTGTACGCAAGTCTTCGAGGATGTCGTTGTCTGGTTCGAGAGAGAAGGATAGATTTCTTACATTTTTGTGCAGATATTTAAGTAGAAAGAAGGTTGTAATGATGATTTTAATGTCATTTGCTCTCATGGCTTTCTTGTCGGGGTTCTTTACCTCCAATAGAGAAGCTGCATCAGAGCGCACGATCTTCAATCCCTTTAACGAGACATTTAATACCTCTTTCCAGTTTGCTAGATTTGATAATCAGAAATACAATAATTCTTCCATGGAGACAACTCTGTCTGTATGTGAAGTGAACCCCCCTACCCGTCGTTATTCGGATGCATCACTTTCTACAGGATCCGTTCTTTCTCATAGCAATTTGTGTAAGAATTTTGCATTTCCTCCTCCTCCTCCAGGTGATAGGAGACGACCTGGACCTCGACCTTGTCCTGTATGTTACCTTCCAGTGGAGGAGGCTATGGCTAGCATGCCGAACTCACCGTCACCATCACCGGTGCTTCATGAGTTAAACTATTTCCATGAGGGGACATCTACTAAAACTGAACCACATGAAGGCTCTGACTTTGGTGGGTATCCTTCCTTAAAGCAAAGGAATGAATCTTTTGATATTAAAGAATCCATGGCTGTGCATTGTGGATTTGTAAAAGGATGCAGACCTGGTTACCAAACTGGATTTGATATTGATGTATCTGATCTTGTGGAGTTGGAGCAGTATCATGATATCATTGTTGCATCGGCCATATTTGGAAACTATGATGTAATTCAACAGCCAACTAAAATTAGCGAGGCTGCAAGTAGAAACATTCCGTTTTATATGTTTATTGATGAAGAGACTGAAGCATATATGAGAAACTCTAGTGCTTTGGACTACAGAATGAAGGTTGGATTGTGGAGAATTATTGTTGTGCACAACATACCTTACACTGATTCGAGACGCAATGGAAAGGTCCCCAAGCTTCTACTACACAGACTCTTCCCAAATGTCCGGTATTCTATATGGATTGATGGGAAGCTGCAACTCGTTGTGGACCCATATCAACTTCTAGAGAGGTTCTTGTGGCGCAACAATGCGACTTTTGCAATTTCAAAACATTATAGGCGATTTGATGTGTTTGAAGAAGCTGAAGCTAATAAGGCTGCCGGGAAATATGACAATGCGTCCATTGATTACCAGATTGATTTTTACAGAAATGAGGGTTTAACACCATATTCTGAAGCTAAACTTCCCATAATCAGTGATGTTCCTGAAGGGTGTGTAATCATACGGGAACACATTCCGATAACAAATCTCTTCACGTGTTTGTGGTTCAATGAAGTTGACCGCTTTACTTCAAGGGATCAGTTAAGTTTTGCTATTGTAAGGGACAAAATTATGGCTCAAGTCAATTGGAGCATCAATATGTTTATGGATTGTGAAAGACGGAACTTTGTGATACAGGCATACCACCGGGATCTACTAGAGCATATGCCACCTCCTGCACCTAAAGTGATTAATTTAAGGCGGACCCGATCTCCTATTCCTGTTCCTGTATCTGTGCGAGTTAATTCACCTGCTAGATATTCAGTAAAGAAAAACCCTGTTCGACGGAAAGGTGAAAGGAGACCTCGTTCAAGGAGACATCCAAAAAATCCCAGTAATAGGGACAACACGGTCTTTTGA 1752 41.32 MTGLSLDIRTQSYASPQQPQNGSLQTQNGFIVRKSSRMSLSGSREKDRFLTFLCRYLSRKKVVMMILMSFALMAFLSGFFTSNREAASERTIFNPFNETFNTSFQFARFDNQKYNNSSMETTLSVCEVNPPTRRYSDASLSTGSVLSHSNLCKNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAMASMPNSPSPSPVLHELNYFHEGTSTKTEPHEGSDFGGYPSLKQRNESFDIKESMAVHCGFVKGCRPGYQTGFDIDVSDLVELEQYHDIIVASAIFGNYDVIQQPTKISEAASRNIPFYMFIDEETEAYMRNSSALDYRMKVGLWRIIVVHNIPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRNNATFAISKHYRRFDVFEEAEANKAAGKYDNASIDYQIDFYRNEGLTPYSEAKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFAIVRDKIMAQVNWSINMFMDCERRNFVIQAYHRDLLEHMPPPAPKVINLRRTRSPIPVPVSVRVNSPARYSVKKNPVRRKGERRPRSRRHPKNPSNRDNTVF 583
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05657 583 PANTHER ALKALINE CERAMIDASE-RELATED 36 540 IPR006852 -
Cind3g05657 583 MobiDBLite consensus disorder prediction 550 583 - -
Cind3g05657 583 Pfam TOD1-MUCI70, glycosyltransferase-like domain 200 513 IPR048354 -
Cind3g05657 583 MobiDBLite consensus disorder prediction 1 28 - -
Cind3g05657 583 MobiDBLite consensus disorder prediction 554 572 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05657 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:10364986 Cind3g05657 Cind-Chr3:323203279 dispersed
Cind Cind-Chr3:323203279 Cind5g01194 Cind-Chr5:159526377 dispersed
Cind Cind-Chr3:323203279 Cind6g02232 Cind-Chr6:156077340 transposed