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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05664 ATGACAACACACGGAGTGAAGAAGATGGCATTAACATCACAAGCATACTTAGACGGATCATCAGTGAAACAAACAAAATCATTAATAACAGAGCTATGTCGTTTGTTTTATAACTTGGGTTGGGTTGGTGGTACCGGTGGAAGTATCACTGCTAAAGTGCACGATGATTCTGTTCCTAAGTCTGATCAGCTTATTATCATGTCTCCTTCTGGTGTGCAGAAGGAAAGAATGGTGGAAGAAGATATGTATGTGTTATCGTCAACTGGAGATATTTTGTTTACGCCATCACCGAAACCTTACCCTCATAAACCTCCAAAGTGTTCAGACTGTGCCTCTCTTTTCATGAAGGCTTATAATATGCGTAATGCTGGTGCAGTCATTCATAGTCATGGAATGGAATCTTGTATTGTTACAATGCTTGATCCTTTGGCAAAAGAGTTTAGGATCACTCATATGGAGATGATTAAAGGGATTCAAGGGCATGGCTATTATGATGAGCTTGTGGTTCCCATAATAGAAAACACTGCTCATGAGAGAGAGTTGACTGAATATCTTGCTGCAGCGATTGAAGCGTGCCCAAAAATAGCTGTTGTATTGGTCCGAAATCATGGTATATATGTATGGGGCGATACCTGGATTAGTGCCAAAACTCAGGCTGAATGCTACCACTATCTCTTTGAAGCTGCAATCAAACTTCACCAATTGGGCCTTGATTGGTCAACTCCAGGTCATGGTCCCATACAAAGATCCAAACCACTTTTAGGTGGTCATACTACAAGCACATCTCAAAAGCATTGTATTGTTCTGGATATTGAAGGGACGACGACTCCTATATCATTTGTCACCGATGTTCTTTTCCCGTATGCCCGTAAAAATGTTCAAAGGCATTTGGAAGCAACATATGATACTGATGCTACTCAAGATGATATTAAGTTGTTGCGCTCTCAAGTACAAGATGATTTACAAAACGGAGTTGCGGATGCTGTTCCTATCCCATCTGATGAGGCGGGAAAAGAGAAGGTGATAGCTGCTTTGGTCGCTAATGTTGAAGGAATGATAAAATCTGACAGGAAAATTACTTCCTTAAAACAGTTACAAGGTCACATATGGCAAACTGGATTTGAGCAAAATGAACTGAAAGGTGTGGTTTTTGATGATGTTCCTAGCGCTCTTGAAAAGTGGCATGCTTCTGGTATAAAGGTGTATATATATTCTAGTGGTAGCAGATTAGCACAGAGGCTGTTATTTGGATATACCAATTACGGGGACTTGAGAAACTACTTGTGCGGGTTTTTTGACACCACAGTGGGGAACAAGAAAGAAACAAAGAGTTATGTTGAAATATCGGAATCACTTGGAGTTCATAAGCCATCTGAAGTCCTGTTTGTAACGGATATCTATCAAGAAGCTGTAGCTGCAAAGGCAGCTGGCTTGGAGGTGACGATCTCTGTTCGGCCCGGAAATGGACCACTTCCCGAGAATCACGGCTTCAAGACAATCAAGTCTTTTTCGGAGATATGA 1521 41.22 MTTHGVKKMALTSQAYLDGSSVKQTKSLITELCRLFYNLGWVGGTGGSITAKVHDDSVPKSDQLIIMSPSGVQKERMVEEDMYVLSSTGDILFTPSPKPYPHKPPKCSDCASLFMKAYNMRNAGAVIHSHGMESCIVTMLDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAHERELTEYLAAAIEACPKIAVVLVRNHGIYVWGDTWISAKTQAECYHYLFEAAIKLHQLGLDWSTPGHGPIQRSKPLLGGHTTSTSQKHCIVLDIEGTTTPISFVTDVLFPYARKNVQRHLEATYDTDATQDDIKLLRSQVQDDLQNGVADAVPIPSDEAGKEKVIAALVANVEGMIKSDRKITSLKQLQGHIWQTGFEQNELKGVVFDDVPSALEKWHASGIKVYIYSSGSRLAQRLLFGYTNYGDLRNYLCGFFDTTVGNKKETKSYVEISESLGVHKPSEVLFVTDIYQEAVAAKAAGLEVTISVRPGNGPLPENHGFKTIKSFSEI 506
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05664 506 Gene3D - 278 373 - -
Cind3g05664 506 SMART Aldolase-II-2 27 230 IPR001303 -
Cind3g05664 506 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 14 238 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Cind3g05664 506 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 278 374 - -
Cind3g05664 506 CDD HAD-EP 266 487 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cind3g05664 506 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 14 506 IPR027505 -
Cind3g05664 506 SUPERFAMILY HAD-like 262 506 IPR036412 -
Cind3g05664 506 PANTHER ENOLASE-PHOSPHATASE E1 260 506 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Cind3g05664 506 Gene3D - 374 506 IPR023214 -
Cind3g05664 506 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 374 506 - -
Cind3g05664 506 SUPERFAMILY AraD-HMP-PK domain-like 23 242 IPR036409 -
Cind3g05664 506 Hamap Enolase-phosphatase E1 [ENOPH1]. 265 506 IPR027511 GO:0019509(InterPro)
Cind3g05664 506 Gene3D - 22 246 IPR036409 -
Cind3g05664 506 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 22 247 - -
Cind3g05664 506 NCBIfam acireductone synthase 266 505 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cind3g05664 506 Pfam Class II Aldolase and Adducin N-terminal domain 29 229 IPR001303 -
Cind3g05664 506 SFLD enolase-phosphatase 265 505 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cind3g05664 506 Pfam haloacid dehalogenase-like hydrolase 266 477 - -
Cind3g05664 506 NCBIfam methylthioribulose 1-phosphate dehydratase 29 235 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Cind3g05664 506 SFLD C1.5.4: Enolase-phosphatase Like 265 505 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05664 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Cind3g05664 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Cind3g05664 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Event-related genes

Select Gene_1 Gene_2 Event_name
67438 Cind1g05536 Cind3g05664
67439 Cind1g05543 Cind3g05664
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:366335608 Cind3g05664 Cind-Chr3:323517836 dispersed
Cind Cind-Chr1:366464163 Cind3g05664 Cind-Chr3:323517836 dispersed
Cind Cind-Chr1:366164043 Cind3g05664 Cind-Chr3:323517836 wgd