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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g05811 ATGGCTTCCTTTGCTACAGCCGAAGTTTGTGACGCAAATGCATCCCACTTAGCAAGTGGTGATCTCCGAGCCCTTGCTCCCATATTCAAGATCTACGGACAATGTCGTGCTTTTTCAGGGCCTGTAGTCACGCTCAAAGTATTTGAGGACAATGTGCTGGTTAGAGACCATCTCGAGACTAAAGGTGAAGGTAGGGTCCTTGTCATTGATGGTGGAGGAAGCATGAGATGTGCACTTGTGGGCGGCAACTTAGGGCAATTGGCTCAAAACATGGGATGGGCTGGGATTGTGGTCAATGGTTGTATCCGTGATGTTGATGAGATTAACGGGTGTGATATTGGGGTTCGAGCATTGGCTTCACATCCTCAGAAATCGAATAAAAGAGGCGTCGGTGAGAAGAATGTTCCCGTTCATATTGGAGGAACTTTGATCCATGATGGGGAATGGTTGTATGCAGATAGTGATGGGATTCTTGTGTCAAAAACTGAGTTGTCTTTATGA 501 46.51 MASFATAEVCDANASHLASGDLRALAPIFKIYGQCRAFSGPVVTLKVFEDNVLVRDHLETKGEGRVLVIDGGGSMRCALVGGNLGQLAQNMGWAGIVVNGCIRDVDEINGCDIGVRALASHPQKSNKRGVGEKNVPVHIGGTLIHDGEWLYADSDGILVSKTELSL 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g05811 166 Pfam Aldolase-RraA 6 159 IPR005493 -
Cind3g05811 166 CDD RraA-family 7 160 IPR005493 -
Cind3g05811 166 Gene3D - 1 166 - -
Cind3g05811 166 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 1 165 - -
Cind3g05811 166 SUPERFAMILY RraA-like 4 164 IPR036704 -
Cind3g05811 166 NCBIfam RraA family 6 160 IPR010203 GO:0008428(InterPro)|GO:0051252(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g05811 K02553 regulator of ribonuclease activity A
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:304904674 Cind3g01957 Cind-Chr3:305684021 proximal