AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind9g03628 ATGGAGTTGCAGAATCAAGTAGCACAGGCGGTGCACGTGCTGAACCACGATACGCAATCGTGTAACCGAGTATCAGCTAATCAGTGGTTAGTTGAGTTTCAACAAACAAATGCTGCTTGGGAGATTGCCACTTGTATATTGACGGCATCTGATAATAAGCAGTTTGTTTCCGATTTCGAAGTCGAATTCTTCGCTGCTCAGCTTCTTAAACGAAAGATCCAAAACGAGGGACATTGTCTCCAGCTGGAAGCAAAAGAATCTCTAGTTAATGCTCTCCTTTTGGCTGCTAAAAGATTTAGTTTAGGCCCATCCCAGCTCTTAACACAGATTTGTCTGGCTCTATGCATGCTCATACTTCATGCGGTGGAGTACTACAAACCGATAGAGAAGCTCTTTTACAGTCTTCAGACCCTGCAAGGTCAAGATGATGGCAATATCGTTGTTTTGGAAATGCTCACGGTCTTACCAGAAGTCGTTGAAGATGAATGTGCTAATTATAGAACCAAATCCGGTCAAAGAATTGACTATGGCCCAGAGCTACTCTCACATACATCCGCAGTGCTAGAGTTCCTAAAGCAGCAATCCGAAGAAAGCTTTAATGGTGCCATTCAACTACATGAACGGAGCAGAAAGATACTGCGCTGTTTGTTAAGTTGGGTTCGAGCAGGATGTTTCTCGGAAATTTTGCCAGTTTCGTTATTAGCCCATCCGCTTCTTAATTTTGTTTTCAATTCTTTACAGGTTTCGTCCTCATTTGATCTGGCAATTGAGGTTTTAATTGACCTCGTTGGCCGACATGAGGGTTTACCACAAGTTCTTCTCAGCAAAGTAGGATTTCTTAAAGACGTTCTTCTACGAGCATTCAATGGTGGAAATGAGAAAGTAATTAGTGGTCTTGCATGCTTGATGTCTGAGATTGGTCAGGCTGCTCCATATTTGATCATAGAAGCCCATTCGGAAGCACTTATACTGGTGGATGCACTTTTGAGCTGTGTATCATTTCCAAGTCAAGATTGGGAGATTGCAGACTCAACTTTGCAGTTCTGGTGTAGTCTTGCAAGCAATATTGTTCGAATGGATGATGAGAATACAGAGAATAGCAAACATGTCAAAGATGTTTTTTCACCAGTATTTTCAGCATTGCTTGATGCTCTTTTGATGCGTTCTCAGGTGGATGATTCAACATATACAAATGAGACTGCACCAAGGGACTTGCCAGATGGCCTTGCTCAGTTTAGGTTAAATCTAGTGGAGCTTATGGTGGACATTTGCCAGCTTCTAAAGTCTGCTGTGTTTTTGCAAAAGATTTTTTTTGGTGGTTGGCTGTCTTCAAACGCACAAATTCCTTGGAAGGAGGTGGAAACCAGAATGTCTGCTCTTAACGTGGTTGCTGATGTAGTACTGCATGAAGGTCAAACATTTGATCTCTCAATGGTCTTGCACTTGGTCACAGTTCTGTGTGATCATGCATCATATGAACCGAAAGGCTTTATGTGCATTGTACATAAATCACTTGCAGATGTTATTGGTTCATATTCGAAGTGGATGTCTTCTTACGTAACTAATGCCAGGCCATTGCTTTTATTTTTTGCAGCTGGTATGTCAGAGCCTTTATGCTCACATGCTTGTGCAACTGCCTTCAGGAAGATCTGTGAAGATGCTACCGTTATGCACGAACCTTCAAGTTTAGAAATGCTAATGTGGATTGGAGAGGGATTGGAAAAGAGACAGTTACCTCTGGAAGACGAGGAAGATATTATTAGTGCTATTACGTTGATACTTGGAAGCCTTCCTAACTTGGAATTAAGAAACAATCTGTTGCTTAAGTTGCTTTCTCCTAGTTGTGGATCTATTGGGAAACTTCTTGATGGAGATCGTGTCCAGTCTTTGAGGCAACTACCAAGTGCTTATACTCATCTTGTCAACTCTGCAACGAGGGGTTTCTTCAGGATAGGAGTTGTATTCAGTCATCTTGTAATGGCACCCACTACATGTCATGATATAGACAATTCTATGATAGTCGTTCTTGAAAGTTTTTGGCCTATGCTTGAAAAATTCTTTCAGTCAGAGCACATTGAGAATGCAAGTTTATCTGTGGCTGCATCCAGGGCTCTCTCACAAGCAATTAAGTCTGCAGGCCATCATTTTGTTACACTGTTGCCAAAAGTTTTGGATTACCTATCAACAAGTTTTGTTTCATTTCAAACTCATGAGTGCTACCTTAAAACAGCTTCTGTTGTCGTTGAAGAATTTGGTAATAAGGAGGAATATGGACCTCTATTTATCAGCACGCTTGAAAGATTTACAAATGCATCATCAGTGATGTCTCTAAATTCTTCATATGTGTGTGATCAAGAGCCCGATCTTGTTGAGGCATATTGCAGTTTTACATCAATATTTCTTCACAGTTCGTCAAAGGAAGTAGTAGCTTCTTCTGGTCCTCTTCTAGAAGTTTCCTTTCAGAAAGCAGCTATTTGTTGTACAGCTATGCATCGTGGAGCAGCACTTGCTGCAATGTCGTATATGTCTTGTTTTCTAGAGTTTTGCATGACTTCATTGCTGGAATCAGCCACTTGTAACTCTGAATTAAATGTTACATCAATGGCGGTTCATGTAATATCTCACAGTGGTGAGGGACTTGTATCAAATGTGGTATATGCTTTACTTGGCGTTTCTGCAATGTCAAGGGTTCATAAATCTGCAACAATATTGCAGCAGTTGGCAGCAGTATGCAGTTTTAGTGAGAAAACAACGTGGAAGTCTATTCTTTGTTGGGATTCTTTGAATAATTGGCTACATGCTGCGGTACGGAGTCTACCTGGTGAGTACTTGAGACAGGGAGAAGCAGAATCTTTAGCACCGGTATGGCTAAAAGCCTTGGGTGATGCAGCAATTGATTATGTTGAAAGCAGAACGAGCCATGGAGAGAAGAATCATAAACATATGCGGGGAAAAGGTGGCAGGATGCTTAAGTATCTATTTCGTGAATTCGTTGATAGTCATCGTAACATTGTTACATGA 3021 41.11 MELQNQVAQAVHVLNHDTQSCNRVSANQWLVEFQQTNAAWEIATCILTASDNKQFVSDFEVEFFAAQLLKRKIQNEGHCLQLEAKESLVNALLLAAKRFSLGPSQLLTQICLALCMLILHAVEYYKPIEKLFYSLQTLQGQDDGNIVVLEMLTVLPEVVEDECANYRTKSGQRIDYGPELLSHTSAVLEFLKQQSEESFNGAIQLHERSRKILRCLLSWVRAGCFSEILPVSLLAHPLLNFVFNSLQVSSSFDLAIEVLIDLVGRHEGLPQVLLSKVGFLKDVLLRAFNGGNEKVISGLACLMSEIGQAAPYLIIEAHSEALILVDALLSCVSFPSQDWEIADSTLQFWCSLASNIVRMDDENTENSKHVKDVFSPVFSALLDALLMRSQVDDSTYTNETAPRDLPDGLAQFRLNLVELMVDICQLLKSAVFLQKIFFGGWLSSNAQIPWKEVETRMSALNVVADVVLHEGQTFDLSMVLHLVTVLCDHASYEPKGFMCIVHKSLADVIGSYSKWMSSYVTNARPLLLFFAAGMSEPLCSHACATAFRKICEDATVMHEPSSLEMLMWIGEGLEKRQLPLEDEEDIISAITLILGSLPNLELRNNLLLKLLSPSCGSIGKLLDGDRVQSLRQLPSAYTHLVNSATRGFFRIGVVFSHLVMAPTTCHDIDNSMIVVLESFWPMLEKFFQSEHIENASLSVAASRALSQAIKSAGHHFVTLLPKVLDYLSTSFVSFQTHECYLKTASVVVEEFGNKEEYGPLFISTLERFTNASSVMSLNSSYVCDQEPDLVEAYCSFTSIFLHSSSKEVVASSGPLLEVSFQKAAICCTAMHRGAALAAMSYMSCFLEFCMTSLLESATCNSELNVTSMAVHVISHSGEGLVSNVVYALLGVSAMSRVHKSATILQQLAAVCSFSEKTTWKSILCWDSLNNWLHAAVRSLPGEYLRQGEAESLAPVWLKALGDAAIDYVESRTSHGEKNHKHMRGKGGRMLKYLFREFVDSHRNIVT 1006
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind9g03628 1006 Gene3D - 2 955 IPR011989 -
Cind9g03628 1006 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 5 1002 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Cind9g03628 1006 SUPERFAMILY ARM repeat 1 850 IPR016024 -
Cind9g03628 1006 Pfam Exportin 1-like protein 104 259 IPR013598 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind9g03628 K15436 transportin-3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr4:59893618 Cind9g03628 Cind-Chr9:154456896 dispersed
Cind Cind-Chr9:154456896 Cind6g03078 Cind-Chr6:17567618 transposed