AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind9g03633 ATGTTGCGAGCCGGAACCCGGAGATTAGCAGCCTCCCTTACATCTCCATGGAGACAAACAACCGCCATCTCCCCCCATATTACTCAGATCTCCGACGACAACACCGCCGCCGCCGACAATGATGTCCGATCGATCTACCGCTCCAATCTCATTTCCAGAGGGTTTGCCTCGAATTCGATCACCCCAAATTTTGAGGACAGAGTTCCACCAACAATAGCAGCCATCACGAACCCTACTTCCAAAATTGTCTATGATCAGTACAATCACGAGCGTTACCCACCTGGTGACCCAAGCAAGCGAGCATTTGCCTATTTTGTCTTGACAGGTGGCAGGTTTGTGTATGCTTCCCTGATTAGGCTTTTGGTCCTCAAATTTGTTCTCAGCATGTCCGCCAGTAAAGACGTTCTTGCCCTTGCCTCTCTTGAGGTTGATCTTGCTAGCATTGAGCCTGGAACCACCGTGACAGTTAAGTGGCGTGGAAAGCCCGTTTTTATCAGGCGCCGGACAGATGATGATGTGAAGTTGGCTAACAGTGTTGATGTTGCATCTCTTCGGGACCCACAAGAGGATGCTGCTAGGGTGAAGAACCCTGAATGGCTTATTGTGGTTGGTGTATGCACCCATCTGGGTTGCATCCCACTACCGAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCTTGTCACGGTTCTCATTATGACATTTCTGGCAGGATCCGTAAGGGCCCAGCACCTTACAACTTGGAGGTCCCAACTTACAGTTTCTTGGAAGACAACAAGTTGCTCATCGGATGA 792 50.0 MLRAGTRRLAASLTSPWRQTTAISPHITQISDDNTAAADNDVRSIYRSNLISRGFASNSITPNFEDRVPPTIAAITNPTSKIVYDQYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLASIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVASLRDPQEDAARVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind9g03633 263 SUPERFAMILY ISP transmembrane anchor 75 136 - -
Cind9g03633 263 CDD Rieske-cytochrome-bc1 140 263 - -
Cind9g03633 263 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 133 263 - -
Cind9g03633 263 Gene3D - 132 263 IPR036922 GO:0051537(InterPro)
Cind9g03633 263 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 173 261 IPR017941 GO:0051537(InterPro)
Cind9g03633 263 Pfam Ubiquinol cytochrome reductase transmembrane region 96 134 IPR004192 GO:0008121(InterPro)
Cind9g03633 263 Pfam Rieske [2Fe-2S] domain 193 248 IPR017941 GO:0051537(InterPro)
Cind9g03633 263 SUPERFAMILY ISP domain 125 262 IPR036922 GO:0051537(InterPro)
Cind9g03633 263 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 67 263 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Cind9g03633 263 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 119 263 IPR006317 GO:0008121(InterPro)
Cind9g03633 263 PRINTS Rieske 2Fe-2S subunit signature 223 235 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cind9g03633 263 PRINTS Rieske 2Fe-2S subunit signature 235 247 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cind9g03633 263 PRINTS Rieske 2Fe-2S subunit signature 201 212 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind9g03633 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr9:154386978 Cind9g01374 Cind-Chr9:217256060 wgd