AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind9g03661 | ATGACAGATCAAGATCAACAACCACCACCTGATAACACCAACAACGAAACCACAAAACTCGAAACCAACGAGCCCGAGCCCGAAAACGAACCATCCACTAACGCGTCACAAGACGGAAAACTTTACGATACAATTGATCAATTCATTTCCATGCTAGGTTCCAATGATCATCAACCAGACTCTTGTTCTCCTCCTGAGATAATCGACTCTGTCAAAAACTACGCTGATCTTTACGACGTTAAGATCGTCGAATACGAAACTGGCTCCAAGAAATGGATCCATCTTGAAAAATATGAATCTGATTCGTTTATCGAATCTGTTGACAGGACTGCCAAGCTTTTGAAATCGTTGTCCGCGTTTCATGCAGATGAGAATTACGCGGTTTTGATTAACCGTGTTAGCGGTATTCAGCAACGCGCAATGTCGTTTATGGAGGTAGAGTTTAAGTCCATTCTGGATGATTTTACGACGTCGTTTGATCGTGATCAGAAGAGTAAATTAGAGGAAGCGAAAAGTAAGGAATTGTCCGCGTCGTTAAGTAATGTTAAGGAAACGGTGGATGATGATAAAAAGGAGACGGCTGATGACGAGACGGAAGGAGAGAAAGAGAGGGATGATTTTTTAGGTTATTCGGATGAGATGATATCGAATTTGAAGAAATTGGCGAAAGGTTTGATAGAAGGTGGGCATGAGACGGAGTGTAGCGAATTGTATTTTTTCGTGAGAAGGAATGCAATGGAACAGAATTTGAAGGTTGTTAGTTTTGAAAAGTTTTCGATTGATGAGATGCAGAAGATGCAATGGGATCCTGTCGAGAAAGAGGTGACGTCGTGGATGAAGATGTTTAAAAACTTTTGTGGCTCGCTTTTGCCTAGCGAGAGGAAGCTTGTTGATGCTGTGTTTTGTGACAGGGTCACAATTTCGGATAATTTGTTCGGGAATTTAACACGAATTGTGTTGTTTTATTTTTTAAGTTTTGCAGAAGCTGTTATGATGACGAAACGTTCTGCTGAGAAACTGTTTAAGTTTCTAGATATTTATGAGACGTTGCGAGATAGTATTCCTGAGGTTGAGAAATTGTTATCTGAGGAATGGCTGCCTCAGCTTAAATCCTCGGTTTCGTTAATAAGTAATATGTTAGGAGAGGCTATTTACAATATTTTTATAGAGCTTGAGAATTCGATTAGAGCTGATACAGCTAAGACGCCTGTTCCTGGTGGAGCGGTACATCCTTTAACTCGTTACACTATGAATTATTTGAAATATGCGTGTGAGTATAGCAACACGTTGGAGCAAGTTTTTAAACAACACAAAAAGATGGATCGAGCTGATTCAGCTACAGGGTCTGAAAGCGATCCAAATCCTCAAGAACAAGCACAAAACCAAGGGAATCAGACAGCACAAGGGTCGCCGTTTCAGTCACAATTAGCTAAAATCATGGACCTGTTGGACACGAATCTGGAAGCAAAATCGAGACTCTACAGAGATCAATCGTTGAGTTTGATATTCATGATGAATAACGGACGGTACATATTGCAGAAGACAAAGGGGACAGGTGAAATGAGGAGCTTGATGGGTGACCCGTGGGTGAGAAAAAGATCCTCGGATTTAAGGAGTTACCACACGAACTACAAGCGTGAAACATGGACAAAGTTGTTGCAATGTTTGAGTCACGAAGGATTGAGTGCAAATGGGAAGGTTATGAAACCAGTGCTAAAAGAAAGATTCAAGAGTTTCAATGCTATGTTTGATGAAATACATAGAACACAAACTACATGGGTTGTGAGCGATGAGCAGCTTCAGTCAGAGCTCAGGGTGTCAATATCGGCAATAGTGATTCCAGCTTATCGGTCGTTTATGGGGAGGTTCAGTCAGGTGTTTACTCCAGGAAGGCAAACAGAGAAGTATATTAAGTATCAGCCGGAAGATATAGAAACATGTATTGAAGAGCTGTTTGATGGGACGACGTCTCAGCAAAGCAAGAAGAGATGA | 1992 | 41.16 | MTDQDQQPPPDNTNNETTKLETNEPEPENEPSTNASQDGKLYDTIDQFISMLGSNDHQPDSCSPPEIIDSVKNYADLYDVKIVEYETGSKKWIHLEKYESDSFIESVDRTAKLLKSLSAFHADENYAVLINRVSGIQQRAMSFMEVEFKSILDDFTTSFDRDQKSKLEEAKSKELSASLSNVKETVDDDKKETADDETEGEKERDDFLGYSDEMISNLKKLAKGLIEGGHETECSELYFFVRRNAMEQNLKVVSFEKFSIDEMQKMQWDPVEKEVTSWMKMFKNFCGSLLPSERKLVDAVFCDRVTISDNLFGNLTRIVLFYFLSFAEAVMMTKRSAEKLFKFLDIYETLRDSIPEVEKLLSEEWLPQLKSSVSLISNMLGEAIYNIFIELENSIRADTAKTPVPGGAVHPLTRYTMNYLKYACEYSNTLEQVFKQHKKMDRADSATGSESDPNPQEQAQNQGNQTAQGSPFQSQLAKIMDLLDTNLEAKSRLYRDQSLSLIFMMNNGRYILQKTKGTGEMRSLMGDPWVRKRSSDLRSYHTNYKRETWTKLLQCLSHEGLSANGKVMKPVLKERFKSFNAMFDEIHRTQTTWVVSDEQLQSELRVSISAIVIPAYRSFMGRFSQVFTPGRQTEKYIKYQPEDIETCIEELFDGTTSQQSKKR | 663 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind9g03661 | 663 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cind9g03661 | 663 | Pfam | Exocyst complex component Exo70 N-terminal | 95 | 153 | - | - | |
| Cind9g03661 | 663 | SUPERFAMILY | Cullin repeat-like | 92 | 653 | IPR016159 | - | |
| Cind9g03661 | 663 | MobiDBLite | consensus disorder prediction | 447 | 471 | - | - | |
| Cind9g03661 | 663 | MobiDBLite | consensus disorder prediction | 182 | 204 | - | - | |
| Cind9g03661 | 663 | MobiDBLite | consensus disorder prediction | 437 | 471 | - | - | |
| Cind9g03661 | 663 | Pfam | Exo70 exocyst complex subunit C-terminal | 276 | 650 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
| Cind9g03661 | 663 | MobiDBLite | consensus disorder prediction | 183 | 204 | - | - | |
| Cind9g03661 | 663 | Gene3D | Exocyst complex component Exo70 | 89 | 662 | - | - | |
| Cind9g03661 | 663 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 96 | 654 | IPR004140 | GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER) | |
| Cind9g03661 | 663 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind9g03661 | K07195 | exocyst complex component 7 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr2:99428649 | Cind9g03661 | Cind-Chr9:153560228 | dispersed | |
| Cind | Cind-Chr6:265386939 | Cind9g03661 | Cind-Chr9:153560228 | dispersed | |
| Cind | Cind-Chr8:104199902 | Cind9g03661 | Cind-Chr9:153560228 | dispersed | |
| Cind | Cind-Chr9:131361934 | Cind9g03661 | Cind-Chr9:153560228 | dispersed | |
| Cind | Cind-Chr9:153560228 | Cind1g05246 | Cind-Chr1:470709343 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g00459 | . | 12 | 636 | EXO70 exocyst subunit family | AT4G31540 | 29.027 | 1.18e-78 | 263.0 | |
| Cind1g04437 | . | 9 | 488 | EXO70 exocyst subunit family | AT3G14090 | 28.163 | 5.70e-46 | 171.0 | |
| Cind1g05246 | . | 51 | 653 | EXO70 exocyst subunit family | AT5G13150 | 45.933 | 0.0 | 534.0 | |
| Cind2g00955 | . | 225 | 489 | EXO70 exocyst subunit family | AT5G13150 | 36.0 | 1.52e-47 | 174.0 | |
| Cind2g02795 | . | 24 | 683 | EXO70 exocyst subunit family | AT5G50380 | 54.94 | 0.0 | 700.0 | |
| Cind2g05190 | . | 487 | 632 | EXO70 exocyst subunit family | AT1G72470 | 71.233 | 1.07e-70 | 222.0 | |
| Cind2g05192 | . | 13 | 606 | EXO70 exocyst subunit family | AT1G54090 | 46.865 | 3.64e-170 | 495.0 | |
| Cind4g00990 | ACH | 9 | 658 | EXO70 exocyst subunit family | AT3G29400 | 46.282 | 0.0 | 558.0 | |
| Cind4g01979 | . | 12 | 663 | EXO70 exocyst subunit family | AT4G31540 | 42.667 | 1.29e-176 | 517.0 | |
| Cind4g02067 | ACH | 19 | 633 | EXO70 exocyst subunit family | AT1G72470 | 58.954 | 0.0 | 732.0 | |
| Cind4g03479 | . | 24 | 682 | EXO70 exocyst subunit family | AT5G50380 | 55.67 | 0.0 | 721.0 | |
| Cind4g04512 | . | 19 | 633 | EXO70 exocyst subunit family | AT1G72470 | 58.439 | 0.0 | 724.0 | |
| Cind4g05440 | . | 1 | 638 | EXO70 exocyst subunit family | AT5G03540 | 75.234 | 0.0 | 986.0 | |
| Cind5g00595 | . | 274 | 342 | EXO70 exocyst subunit family | AT5G03540 | 57.143 | 8.88e-20 | 80.1 | |
| Cind5g04592 | . | 11 | 678 | EXO70 exocyst subunit family | AT4G31540 | 68.713 | 0.0 | 959.0 | |
| Cind6g00898 | . | 1 | 624 | EXO70 exocyst subunit family | AT5G58430 | 61.31 | 0.0 | 755.0 | |
| Cind7g01508 | . | 90 | 632 | EXO70 exocyst subunit family | AT5G03540 | 61.905 | 0.0 | 663.0 | |
| Cind7g02291 | . | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 51.031 | 0.0 | 582.0 | |
| Cind7g02293 | . | 32 | 604 | EXO70 exocyst subunit family | AT3G09520 | 50.519 | 0.0 | 572.0 | |
| Cind7g02294 | . | 37 | 604 | EXO70 exocyst subunit family | AT3G09520 | 51.309 | 0.0 | 565.0 | |
| Cind7g03093 | . | 11 | 329 | EXO70 exocyst subunit family | AT2G39380 | 43.478 | 2.16e-71 | 230.0 | |
| Cind7g03557 | . | 224 | 528 | EXO70 exocyst subunit family | AT5G52340 | 66.013 | 6.37e-144 | 423.0 | |
| Cind8g01395 | ACH | 26 | 633 | EXO70 exocyst subunit family | AT1G72470 | 64.136 | 0.0 | 767.0 | |
| Cind8g02611 | . | 75 | 599 | EXO70 exocyst subunit family | AT5G59730 | 51.402 | 0.0 | 536.0 | |
| Cind8g02612 | . | 6 | 611 | EXO70 exocyst subunit family | AT2G39380 | 48.777 | 0.0 | 566.0 | |
| Cind8g03746 | . | 2 | 619 | EXO70 exocyst subunit family | AT5G58430 | 54.093 | 0.0 | 667.0 | |
| Cind9g03018 | ACH | 9 | 658 | EXO70 exocyst subunit family | AT3G29400 | 46.142 | 0.0 | 529.0 | |
| Cind9g03661 | . | 52 | 687 | EXO70 exocyst subunit family | AT5G13990 | 47.094 | 0.0 | 559.0 |