AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind9g03673 | ATGAATCCACCCAGAGTCACAATTGATAACAATTCTTCACCAGATGCAACTGTTATACAGGTTGAAAGTGTAAATAAGCATGGGATTCTGTTGGAAGTTGTGCAAGTTCTATCGGATTTAGACCTTGTTATAACCAAAGCGTATATATCGTCGGATGGAGGGTGGTTCATGGATGTTTTCAGTGTTACTTATCGGGATGGAAGCAAAATTCGAGATGAAGGTGTTGTCAATTACATAAAAGAGGTGCTTGAAAACGATGCATTTTATGTACCAACACTGAGTAGCTCAGTTGGATTGAAGCCTTCAGAAGATTACACAGCAATCGAGCTAGTTGGCGCAGACAGACCTGGATTGCTATCTGAAGTATCTGCAGTACTAACAGATCTTGGTTGTAATGTGGTGAGTGCTGAAATATGGACTCACAATGCTAGAGCTGCAGCCGTGGTTCACGTCACAGATGAGAAAACGAGATGTGCAGTTGAAGACCCAAAGAGGCTCCTAACTATTAAGAAATTGCTTTGTAATGTTCTTAAGGGAAACAATGACTTGAAAACTGCAAAAATGACACTTTCGGCCCCTGGTTACATGCACAGACAGAGAAGATTACATCAAATTATGTTTGCTGAGCGGGATTATGAAAAGATTGAAAGGGCAGAACAGGAAGACAGGTTAAGGCCACAGGTTACTGTTTTAGATTGCGTTGAGAAGGATTACACGGTTATTACCATGCATTGTAGGGATCGACCAAAGCTGTTGTTTGATATTATCTGCACTCTTACTGACATGGAGTATGTAGTCTTCCATGGAGTTGTTCACACAGGGAAGATGGAAGCTTTTCAGGAATACTACATTCGTCATGTTGATGGATGCCCAGTAAGCTCAGAGGCAGAGCGAGAGCGAGTTATGCAGTGTCTTGAAGCTGCAATTGAGAGGAGAACGTCCGAGGCGCTTGAGCTAGAGTTATGCACAGCAGATCGTGTTGGACTTCTTTCTGATATAACCAGGATCTTTAGAGAAAACAGTTTATGTATAAAAAGAGCAGAGATATCAACTGAAGGTGGAAAAGCCAAGGATAAATTTTATGTGACGGACATGACGGGTAATAGCCCTGTGGACCCGAAGACCATAGATTCTATCCAGAGACAAATCGGGCAACATGCAGCACTGCATGTCAGATGGAACTCTACCCAATCACCAGAGCCACCACCTGAAGAAACAACAATGAGCTTTCTGTTTGGAAACTTGTTTAAAGTGGTCGGATCATACTCCTGA | 1272 | 42.37 | MNPPRVTIDNNSSPDATVIQVESVNKHGILLEVVQVLSDLDLVITKAYISSDGGWFMDVFSVTYRDGSKIRDEGVVNYIKEVLENDAFYVPTLSSSVGLKPSEDYTAIELVGADRPGLLSEVSAVLTDLGCNVVSAEIWTHNARAAAVVHVTDEKTRCAVEDPKRLLTIKKLLCNVLKGNNDLKTAKMTLSAPGYMHRQRRLHQIMFAERDYEKIERAEQEDRLRPQVTVLDCVEKDYTVITMHCRDRPKLLFDIICTLTDMEYVVFHGVVHTGKMEAFQEYYIRHVDGCPVSSEAERERVMQCLEAAIERRTSEALELELCTADRVGLLSDITRIFRENSLCIKRAEISTEGGKAKDKFYVTDMTGNSPVDPKTIDSIQRQIGQHAALHVRWNSTQSPEPPPEETTMSFLFGNLFKVVGSYS | 423 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind9g03673 | 423 | SUPERFAMILY | ACT-like | 13 | 82 | IPR045865 | - | |
| Cind9g03673 | 423 | ProSiteProfiles | ACT domain profile. | 107 | 188 | IPR002912 | - | |
| Cind9g03673 | 423 | PANTHER | ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED | 1 | 394 | IPR040217 | - | |
| Cind9g03673 | 423 | ProSiteProfiles | ACT domain profile. | 318 | 399 | IPR002912 | - | |
| Cind9g03673 | 423 | Gene3D | - | 103 | 172 | - | - | |
| Cind9g03673 | 423 | ProSiteProfiles | ACT domain profile. | 18 | 96 | IPR002912 | - | |
| Cind9g03673 | 423 | CDD | ACT-ACR-2 | 106 | 179 | - | - | |
| Cind9g03673 | 423 | CDD | ACT-ACR-3 | 238 | 312 | - | - | |
| Cind9g03673 | 423 | Pfam | ACT domain | 107 | 155 | IPR002912 | - | |
| Cind9g03673 | 423 | SUPERFAMILY | ACT-like | 102 | 160 | IPR045865 | - | |
| Cind9g03673 | 423 | SUPERFAMILY | ACT-like | 313 | 387 | IPR045865 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind9g03673 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 68196 | Cind4g02571 | Cind9g03673 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr6:78862443 | Cind9g03673 | Cind-Chr9:152937222 | dispersed | |
| Cind | Cind-Chr7:35374275 | Cind9g03673 | Cind-Chr9:152937222 | dispersed | |
| Cind | Cind-Chr9:157269938 | Cind9g03673 | Cind-Chr9:152937222 | dispersed | |
| Cind | Cind-Chr9:152937222 | Cind9g03671 | Cind-Chr9:152951918 | proximal | |
| Cind | Cind-Chr2:332124520 | Cind9g03673 | Cind-Chr9:152937222 | transposed | |
| Cind | Cind-Chr4:165901659 | Cind9g03673 | Cind-Chr9:152937222 | transposed | |
| Cind | Cind-Chr5:1838667 | Cind9g03673 | Cind-Chr9:152937222 | transposed | |
| Cind | Cind-Chr4:165900611 | Cind9g03673 | Cind-Chr9:152937222 | wgd | |
| Cind | Cind-Chr9:152937222 | Cind9g03528 | Cind-Chr9:219141310 | wgd |